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PCT

WORLD INTELLECTUAL PROPERTY ORGANIZATION
International Bureau

INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT)

(51) International Patent Classification 6 :
G01N 27/327, 33/543, 33/84, 27/333

(11) International Publication Number: WO 98/57159

(43) International Publication Date: 17 December 1998 (17.12.98)

(21) International Application Number: PCT/US98/ 12430

(22) International Filing Date: 12 June 1998 (12.06.98)

(30) Priority Data:
60/049,489

12 June 1997(12.06.97)

(71) Applicant: CLINICAL MICRO SENSORS, INC. [US/US];
101 Waverly Avenue, Pasadena, CA 91 105 (US).

(72) Inventors: O'CONNOR, Stephen, D.; 4222 S. El Mplino #16,
Pasadena, CA 91101 (US). KAYYEM, Jon, F.; 428 S.
Sierra Bonita Avenue, Pasadena, CA 91 106 (US). MEADE,
Thomas, J.; 1656 New York Drive, Altadena, CA 91001
(US).

(74) Agents: TRECARTTN, Richard, F. et aU Flehr, Hohbach,
Test, Albritton & Herbert LLP, Suite 3400, 4 Embarcadero
Center, San Francisco, CA 94111-4187 (US).

(81) Designated States: AL, AM, AT, AU, AZ, BA, BB, BG, BR,
BY, CA, CH, CN, CU, CZ, DE, DK, EE, ES, FI, GB, GE,
GH, GM, GW, HU, ID, IL, IS, JP, KE, KG, KP, KR, KZ,
LC, LK, LR, LS, LT, LU, LV, MD, MG, MK, MN, MW,
MX, NO, NZ, PL, PT, RO, RU, SD, SE, SG, SI, SK, SL, TJ,
TM, TR, TT, UA, UG, UZ, VN, YU, ZW, ARIPO patent
(GH, GM, KE, LS, MW, SD, SZ, UG, ZW), Eurasian patent
(AM, AZ, BY, KG, KZ, MD, RU, TJ, TM), European patent
(AT, BE, CH, CY, DE, DK, ES, FI, FR, GB, GR, IE, IT,
LU, MC f NL, PT, SE), OAPI patent (BF, BJ, CF, CG, CI,
CM, GA, GN, ML, MR, NE, SN, TD, TG).

Published

With international search report.

Before the expiration of the time limit for amending the
claims and to be republished in the event of the receipt of
amendments.

(54) Title: ELECTRONIC METHODS FOR THE DETECTION OF ANALYTES
(57) Abstract

The present invention is directed to the detection of target analytes using electronic techniques, particularly AC techniques.

FOR THE PURPOSES OF INFORMATION ONLY

Codes used to identify States party to the PCT on the front pages of pamphlets publishing international applications under the PCT.

Albania

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WO 98/57159

PCT/US98/12430

ELECTRONIC METHODS FOR THE
DETECTION OF ANALYTES

CROSS-REFERENCED TO RELATED APPLICATIONS

This is a continuing application of Application Serial No. 60/049,489, filed 12 June 1997.

FIELD OF THE INVENTION

The invention relates to analytical methods and apparatus, and particularly to the detection of analytes,
including biomolecules, using electronic techniques, particularly AC techniques.

BACKGROUND OF THE INVENTION

There are a number of assays and sensors for the detection of the presence and/or concentration of
specific substances in fluids and gases. Many of these rely on specific ligand/antillgand reactions as the
mechanism of detection. That is, pairs of substances (i.e. the binding pairs or ligand/antiligands) are
known to bind to each other, while binding little or not at all to other substances. This has been the
focus of a number of techniques that utilize these binding pairs for the detection of the complexes.
These generally are done by labeling one component of the complex in some way, so as to make the
entire complex detectable, using, for example, radioisotopes, fluorescent and other optically active
molecules, enzymes, etc.

Other assays rely on electronic signals for detection. Of particular interest are biosensors. At least two
types of biosensors are known; enzyme-based or metabolic biosensors and binding or bioaffinlty
sensors. See for example U.S. Patent No. 4,713,347; 5,192,507; 4,920,047; 3,873,267; and references
disclosed therein. While some of these known sensors use alternating current (AC) techniques, these
techniques are generally limited to the detection of differences in bulk (or dielectric) impedance, and
rely on the use of mediators in solution to shuttle the charge to the electrode.

Recently, there have been several preliminary reports on the use of very short connections between a
binding ligand and the electrode, for direct detection, i.e. without the use of mediators. See Lfltzbeyer et
ai., Bioelectrochemistry and Bioenergetics 42:1-6 (1997); Dong et al., Bioeiectrochemistry and
Bioenergetics 42:7-1 3 (1 997).

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In addition, there are a number of reports of self-assembled monolayers of conjugated oligomers on
surfaces such as gold. See for example Cygan et a!., J. Am. Chem. Soc. 1202721 (1998).

In addition, Charych et al. report on the direct colormetric detection of a receptor-ligand interaction
5 using a bilayer assembly (Science 261 :585 (1 993).

Accordingly, it is an object of the invention to provide novel methods and compositions for the detection
of target analytes using AC techniques.

0 SUMMARY OF THE INVENTION

Accordingly, in accordance with the above objects, the present invention provides methods of detecting
a target analyte in a test sample comprising a redox active molecule and an analyte The method
comprises applying an input signal to the test sample and detecting a change in the faradaic impedance
15 of the system as a result of the association of the redox active molecule with the analyte.

In an additional aspect, the invention provides methods binding the target analyte to a redox active
complex comprising a redox active molecule and a binding ligand which will bind the target analyte,
followed by detection of a change in the faradaic impedance of the system as a result of the association
20 of the redox active molecule with the target analyte, if present.

The methods further comprising applying a first input signal to said redox active complex; the input
signal can comprise an AC component and/or a DC component

25 In a further aspect, the invention provides apparatus for the detection of analyte in a test sample,
comprising a test chamber comprising at least a first and a second measuring electrode, wherein the
first measuring electrode comprises a covaiently attached ligand for an analyte, and an AC/DC voltage
source electrically connected to the test chamber.

30 In an additional aspect, the present invention provides metal ion sensors comprising electrodes

comprising self-assembled monolayers and at least one metal ion ligand or chelate covaiently attached
to the electrode via a conductive oligomer.

35 BRIEF DESCRIPTION OF THE DRAWINGS

Figure 1 depicts the synthetic scheme for a conductive polymer containing an aromatic group with a
substitution group. The conductive oligomer is a phenyl-acetylene Structure 5 oligomer with a single

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methyl R group on each phenyl ring, although other oligomers may be used, and terminates in an ethyl
pyridine protecting group, as described herein, for attachment to gold electrodes.

Figure 2 depicts the synthetic scheme for making a redox active complex comprising a RAM, in this
case ferrocene, to a protein binding ligand, in this case an antibody, using a standard coupling reaction.
As will be appreciated by those in the art, any proteins that either contain suitable amines or can be
derivatized to contain a suitable amine can be added in this manner. Alternatively, the amine may be
added to the RAM and the BL contains the carboxylic acid. Similarly, while this figure depicts the
attachment of a RAM (ferrocene), a similar reaction may be done with a conductive oligomer
terminating in a carboxylic acid (or an amine), for attachment to a proteinaceous binding ligand. In
addition, while not depicted, "Z" linkers, as described below, may be added in between the components.

Figure 3 depicts the synthetic scheme of a System 3 type sensor, comprising a conductive oligomer
containing a redox active complex of a RAM (in this case ferrocene), with a binding ligand On this case a
biotin derivative): Any number of other RAMs and BLs may be used. Additional *Z m linkers, as
described below, may be added in between the components. As for figure 2, a standard coupling agent
(carbodimide) is used, which allows the attachment of virtually any amine- or carboxylic acid-containing
moieties. The first subunit of the conductive oligomer is used, and then subsequent subunits are added.

Figure 4 depicts a sensor of the invention, directed to the detection of antibodies to a drug. Upon the
introduction of a patient sample, with binding of the antibody to its antigen, the environment of the RAM
is altered, leading to a detectable change in the signal (i e. an alteration in the faradaic impedance).
The redox potential of the RAM may be altered, or there may be a signal increase or alteration. As will
be appreciated by those in the art, the drug in this case could be replaced by virtually any binding
ligand. In addition, this type of reaction may be run as a standard competitive type assay.

Figures 5A, 5B and 5C depict some possible ion sensors. The binding of ions such as U+, Mg+2 or
Na+ can alter the redox potential of the ferrocene by altering the electron withdrawing properties of the
crown ethers, thus effecting a change in the signal upon binding.

Figures 6A, 6B, 6C, 6D and 6E depict a metal ion sensor embodiment of the invention. Figure 6A
depicts a chelate metal ion binding ligand, in this case phenanthroline, that was subsequently attached
to a gold electrode, with a monolayer present Figures 6B and 6C depict AC scans in the absence (6B)
and presence (6C) of FeCI 2 , showing a peak around 450 mV, the redox potential of the iron. Figure 6D
depicts the same composition in the presence of RufNH^PyCI, with a peak at around 650 mV. Figure
6E depicts the same composition in the presence of I^Fe^CN)* also with a peak around 650 mV.

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DETAILED DESCRIPTION OF THE INVENTION

The present invention Is directed to the detection of analytes using alternating current (AC) (also
sometimes referred to as alternating voltage (AV)) techniques. The invention is based on the fact that
at least one redox property of a redox active molecule may be altered as a result of its association with
a target analyte. Without being bound by theory, it appears that changes in the environment of the
redox active molecule can result in altered redox properties. That is T upon association of the analyte
and the redox active molecule in some way, a measurable redox property of the redox active molecule
changes, thus allowing the detection of the analyte. In particular, it has been discovered that relatively
small changes in measurable redox properties can be detected using AC techniques, enabling a variety
of possible biosensors.

The change in a redox property of the redox active molecule is a result of the association with an
analyte. This may be due to a binding event, which may alter the conformation or accessibility of the
redox active molecule, and/or a change in the local environment of the redox active molecule (for
example in the solvent reorganization energy), both of which will alter the faradaic impedance of the
system, which in turn results in a characteristic output signal, i.e. a different output signal than is
received in the absence of the target analyte.

Accordingly, the present invention is directed to the detection of analytes using changes in the faradaic
impedance of the system as a result of the binding or association of an analyte. By "faradaic
impedance" herein is meant the impedance between the redox active molecule and the electrode.
Changes in capacitance (e.g. due to binding of compounds to the surface or bulk dielectric
capacitance) are not included in the definition of changes in faradaic impedance. This is quite different
from the bulk or dielectric impedance, which is the impedance of the bulk solution between the
electrodes. Many factors may change the faradaic impedance which may not effect the bulk
impedance, and vice versa. As described herein, any number of perturbations of the system can result
in an altered faradaic impedance, which may then serve as the basis of an assay. These include, but
are not limited to, changes in electronic coupling of the redox active molecule and the electrode (often
referred to as in the literature); changes in A, the nuclear reorganization energy, which is usually
dominated by the solvent reorganization energy; changes in E<, of the redox active molecule; the charge
transfer impedance of the redox active molecule in the system; the mass transfer impedance of the
redox active molecule in the system; changes in the redox active molecule, including exchange of
ligands or metal ions; etc.

Systems relying on changes in faradaic impedance can be distinguished from prior art systems on the
basis of the use of mediators. That is, prior art systems usually rely on the use of soluble mediators to
shuttle electrons between the redox active molecules and the electrode; however, the present invention
relies on direct electron transfer between the redox active molecule and the electrode, generally

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through the use of conductive oligomers. Thus, the methods of the present invention are generally run
in the absence of soluble mediators that serve to electronically mediate the redox active molecule and
the electrode. That is, the redox active molecules (RAMs) are directly attached to the electrodes of the
invention, rather than relying on bulk diffusion mechanisms. Mediators in this context are to be
5 distinguished by co-reductants and co-oxidants, as generally described below.

Generally, compositions and methods described in PCT US97/20014, hereby explicitly incorporated
herein by reference in its entirety, find use in the present invention.

1 0 Thus the present invention is directed to methods and compositions for the detection of target analytes
in test samples. By target analyte" or "analyte" or grammatical equivalents herein is meant any
molecule, compound or particle to be detected. As outlined below, target analytes preferably bind to
binding ligands, as is more fully described below. As will be appreciated by those in the art, a large
number of analytes may be detected using the present methods; basically, any target analyte for which

15 a binding ligand, described below, may be made may be detected using the methods of the invention.

Suitable analytes include organic and inorganic molecules, including biomolecules. In a preferred
embodiment, the analyte may be an environmental pollutant (including pesticides, insecticides, toxins,
etc.); a chemical (including solvents, polymers, organic materials, etc.); therapeutic molecules

20 (including therapeutic and abused drugs, antibiotics, etc.); biomolecules (including hormones,

cytokines, proteins, lipids, carbohydrates, cellular membrane antigens and receptors (neural, hormonal,
nutrient, and cell surface receptors) or their ligands, etc); whole cells (including procaryotic (such as
pathogenic bacteria) and eukaryotic cells, including mammalian tumor cells); viruses (including
retroviruses, herpesviruses, adenoviruses, lentiviruses, etc.); and spores; etc. Particularly preferred

25 analytes are environmental pollutants; nucleic acids; proteins (including enzymes, antibodies, antigens,
growth factors, cytokines, etc); therapeutic and abused drugs; cells; and viruses.

In a preferred embodiment, the target analytes are not nucleic acids. Similarly, a preferred
embodiment utilizes target analytes that are not glucose, and redox active complexes that do not
30 contain glucose oxidase.

In a preferred embodiment, the target analyte is a protein. As will be appreciated by those in the art,
there are a large number of possible proteinaceous target analytes that may be detected using the
present invention. By "proteins" or grammatical equivalents herein is meant proteins, oligopeptides and
35 peptides, derivatives and analogs, including proteins containing norvnaturaliy occurring amino acids
and amino add analogs, and peptidomimetic structures. The side chains may be in either the (R) or the
(S) configuration. In a preferred embodiment the amino acids are in the (S) or L-configuration. As
discussed below, when the protein is used as a binding ligand, it may be desirable to utilize protein
analogs to retard degradation by sample contaminants.

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Suitable protein target anatytes include, but are not limited to, (1) immunoglobulins, particularly IgEs,
IgGs and IgMs, and particularly therapeutically or diagnostically relevant antibodies, including but not
limited to, for example, antibodies to human albumin, apoiipoproteins (including apolipoprotein E),
human chorionic gonadotropin, Cortisol, a-fetoprotein, thyroxin, thyroid stimulating hormone (TSH),
5 antithrombin, antibodies to pharmaceuticals (including antieptileptic drugs (phenytoin, primidone,
carbariezepin, ethosuximide, valproic acid, and phenobarbitol), cardioactive drugs (digoxin, lidocaine,
procainamide, and disopyramide), bronchodilators (theophylline), antibiotics (chloramphenicol,
sulfonamides), antidepressants, immunosuppresants, abused drugs (amphetamine,
methamphetamine, cannabinoids, cocaine and opiates) and antibodies to any number of viruses

1 0 (including orthomyxoviruses, (e.g. influenza virus), paramyxoviruses (e.g respiratory syncytial virus,
mumps virus, measles virus), adenoviruses, rhinoviruses, coronaviruses, reoviruses, togaviruses (e.g.
rubella virus), parvoviruses, poxviruses (e.g. variola virus, vaccinia virus), enteroviruses (e.g. poliovirus,
coxsackievirus), hepatitis viruses (including A, B and C), herpesviruses (e.g. Herpes simplex virus,
varicella-zoster virus, cytomegalovirus, Epstein-Barr virus), rotaviruses, Norwalk viruses, hantavirus,

1 5 arenavirus, rhabdovirus (e.g. rabies virus), retroviruses (including HIV, HTLV-I and -II), papovaviruses
(e.g. papillomavirus), polyomaviruses, and picornaviruses, and the like), and bacteria (including a wide
variety of pathogenic and non-pathogenic prokaryotes of interest including Bacillus; Vibrio, e.g. V.
cholerae; Escherichia, e.g. Enterotoxigenic £ coli t Shigella, e.g. S. dysentehae; Salmonella, e.g. S.
typhi; Mycobacterium e.g. M tuberculosis, M. leprae; Clostridium, e.g. C. botulinum, C. tetani, C.

20 difficile, C.perfhngens; Cornyebacterium, e.g. C. diphtheriae; Streptococcus, S. pyogenes, S.
pneumoniae; Staphylococcus, e.g. S. aureus; Haemophilus, e.g. H. influenzae; Neisseria, e.g. N.
meningitidis, N. gonorrhoeae; Yersinia, e.g. G. lambliaY. pestis, Pseudomonas, e.g. P. aeruginosa, P.
putida; Chlamydia, e.g. C. trachomatis; Bordetella, e.g. B. pertussis; Treponema, e.g. T. palladium; and
the like); (2) enzymes (and other proteins), including but not limited to, enzymes used as indicators of or

25 treatment for heart disease, including creatine kinase, lactate dehydrogenase, aspartate amino

transferase, troponin T, myoglobin, fibrinogen, cholesterol, triglycerides, thrombin, tissue plasminogen
activator (tPA); pancreatic disease indicators including amylase, lipase, chymotrypsin and trypsin; liver
function enzymes and proteins including cholinesterase, bilirubin, and alkaline phosphotase; aldolase,
prostatic acid phosphatase, terminal deoxynucleotidyl transferase, and bacterial and viral enzymes

30 such as HIV protease; (3) hormones and cytokines (many of which serve as ligands for cellular

receptors) such as erythropoietin (EPO), thrombopoietin (TPO), the interleukins (Including IL-1 through
IL-17), insulin, insulin-like growth factors (including IGF-1 and -2), epidermal growth factor (EGF),
transforming growth factors (including TGF-a and TGF-P), human growth hormone, transferrin,
epidermal growth factor (EGF), low density lipoprotein, high density lipoprotein, leptin, VEGF, PDGF,

35 ciliary neurotrophic factor, prolactin, adrenocorticotropic hormone (ACTH), calcitonin, human chorionic
gonadotropin, cotrisol, estradiol, follicle stimulating hormone (FSH), thyroid-stimulating hormone (TSH),
leutinzing hormone (LH), progeterone, testosterone, ; and (4) other proteins (including a-fetoprotein,
carcinoembryonic antigen CEA.

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In addition, any of the biomolecules for which antibodies may be detected may be detected directly as
well; that is, detection of virus or bacterial cells, therapeutic and abused drugs, etc., may be done
directly.

5 Suitable target analytes include carbohydrates, including but not limited to, markers for breast cancer
(CA15-3, CA 549, CA 27.29), mucin-like carcinoma associated antigen (MCA), ovarian cancer (CA125),
pancreatic cancer (DE-PAN-2), and colorectal and pancreatic cancer (CA 19, CA 50, CA242).

Suitable target analytes include metal ions, particularly heavy and/or toxic metals, including but not
1 0 limited to, aluminum, arsenic, cadmium, selenium, cobalt, copper, chromium, lead, silver and nickel.

In a preferred embodiment, the target analyte is added to or introduced to a redox active molecule or
redox active complex. By "redox active molecule" or "RAM* or "electron transfer moiety" or "ETM"
herein is meant a compound which is capable of reversibly, semkeversibly, or irreversibly transferring

1 5 one or more electrons. The terms "electron donor moiety", "electron acceptor moiety", and "electron
transfer moieties" or grammatical equivalents herein refers to molecules capable of electron transfer
under certain conditions. It is to be understood that electron donor and acceptor capabilities are
relative; that is, a molecule which can lose an electron under certain experimental conditions will be
able to accept an electron under different experimental conditions. It is to be understood that the

20 number of possible electron donor moieties and electron acceptor moieties is very large, and that one
skilled in the art of electron transfer compounds will be able to utilize a number of compounds in the
present invention. Preferred electron transfer moieties include, but are not limited to, transition metal
complexes, organic electron transfer moieties, and electrodes.

25 In a preferred embodiment, the electron transfer moieties are transition metal complexes. Transition
metals include those whose atoms have a partial or complete d shell of electrons; elements having the
atomic numbers 21-30, 39-48, 57-80 and the lanthanide series. Suitable transition metals for use in the
invention include, but are not limited to, cadmium (Cd), copper (Cu), cobalt (Co), palladium (Pd), zinc
(Zn), iron (Fe), ruthenium (Ru), rhodium (Rh), osmium (Os), rhenium (Re), platinium (Pt), scandium

30 (Sc), titanium (Ti), Vanadium (V), chromium (Cr), manganese (Mn), nickel (Ni), Molybdenum (Mo),
technetium (T c), tungsten (W), and iridium 00. That is, the first series of transition metals, the platinum
metals (Ru, Rh, Pd, Os, Ir and Pt), along with Fe, Re, W, Mo and Tc, are preferred. Particularly
preferred are ruthenium, rhenium, osmium, platinium, cobalt and iron.

35 The transition metals are complexed with a variety of ligands, generally depicted herein as V, to form
suitable transition metal complexes, as is well known in the art Suitable ligands fall into two categories:
ligands which use nitrogen, oxygen, sulfur, carbon or phosphorus atoms (depending on the metal ion)
as the coordination atoms (generally referred to in the literature as sigma (o) donors) and
organometallic ligands such as metallocene ligands (generally referred to in the literature as pi (n)

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donors, and depicted herein as LJ> Suitable nitrogen donating ligands are wei! known in the art and
include, but are not limited to, NH 2 ; NHR; NRR'; pyridine; pyrazine; isonicotinamide; imidazole;
^pyridine and substituted derivatives of bipyridine; terpyridine and substituted derivatives;
phenanthrolines, particularly 1 ,10-phenanthroline (abbreviated phen) and substituted derivatives of
5 phenanthrolines such as 4,7-dimethylphenanthroline and dipyrkJol[3,2-a:2\3'-c]phenazine (abbreviated
dppz); dipyridophenazine; 1 ,4,5,8,9,1 2-hexaazatriphenyiene (abbreviated hat); 9,10-
phenanthrenequinone diimine (abbreviated phi); 1 ,4,5,8-tetraazaphenanthrene (abbreviated tap);
1 ,4,8,1 1-tetra-azacyclotetradecane (abbreviated cyclam) and isocyanide. Substituted derivatives,
including fused derivatives, may also be used. In some embodiments, porphyrins and substituted
1 0 derivatives of the porphyrin family may be used. See for example, Comprehensive Coordination

Chemistry, Ed. Wilkinson et aL, Pergammon Press, 1987, Chapters 13.2 (pp73-98), 21.1 (pp. 81 3-898)
and 21 .3 (pp 91 5-957), ail of which are hereby expressly incorporated by reference.

Suitable sigma donating ligands using carbon, oxygen, sulfur and phosphorus are known in the art. For
1 5 example, suitable sigma carbon donors are found in Cotton and Wilkenson, Advanced Organic

Chemistry, 5th Edition, John Wiley & Sons, 1988, hereby incorporated by reference; see page 38, for
example. Similarly, suitable oxygen ligands include crown ethers, water and others known in the art
Phosphines and substituted phosphines are also suitable; see page 38 of Cotton and Wilkenson.

20 The oxygen, sulfur, phosphorus and nitrogen-donating ligands are attached in such a manner as to
allow the heteroatoms to serve as coordination atoms.

In a preferred embodiment, organometailic ligands are used. In addition to purely organic compounds
for use as redox moieties, and various transition metal coordination complexes with 6-bonded organic

25 ligand with donor atoms as heterocyclic or exocyclic substituents, there is available a wide variety of
transition metal organometailic compounds with n-bonded organic ligands (see Advanced Inorganic
Chemistry, 5th Ed., Cotton & Wilkinson, John Wiley & Sons, 1988, chapter 26; Organometallics, A
Concise Introduction, Elschenbroich et al. t 2nd Ed., 1992, VCH; and Comprehensive Organometailic
Chemistry II, A Review of the Literature 1982-1994, Abel et al. Ed., Vol. 7, chapters 7, 8, 10 & 1 1 ,

30 Pergamon Press, hereby expressly incorporated by reference). Such organometailic ligands include
cyclic aromatic compounds such as the cyciopentadienkJe ion [C 5 H 5 (-1)] and various ring substituted
and ring fused derivatives, such as the indenylide (-1) ion, that yield a class of bls(cyclopentadieyl)metaI
compounds, (i.e. the metallocenes); see for example Robins et al., J. Am. Chem. Soc. 104:1882-
1893 (1982); and Gassman et aL, J. Am. Chem. Soc. 108:4228-4229 (1986), incorporated by

35 reference. Of these, ferrocene [(CJHJJFe] and its derivatives are prototypical examples which have
been used in a wide variety of chemical (Connelly et aL, Chem. Rev. 96:877-91 0 (1 996), incorporated
by reference) and electrochemical (Geiger et aL, Advances in Organometailic Chemistry 23:1-93; and
Geiger et aL, Advances in Organometailic Chemistry 24:87, incorporated by reference) electron
transfer or "redox" reactions. Metaliocene derivatives of a variety of the first, second and third row

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transition metals are potential candidates as redox moieties. Other potentially suitable organometallic
ligands include cyclic arenes such as benzene, to yield bis(arene)metal compounds and their ring
substituted and ring fused derivatives, of which bis(benzene)chromium is a prototypical example, Other
acyclic n-bonded ligands such as the allyl(-1) Ion, or butadiene yield potentially suitable organometallic
compounds, and all such ligands, in conjuction with other n-bonded and 6-bonded ligands constitute
the general class of organometallic compounds in which there is a metal to carbon bond.
Electrochemical studies of various dinners and oligomers of such compounds with bridging organic
ligands, and additional non-bridging ligands, as well as with and without metal-metal bonds are
potential candidate redox moieties.

As described herein, any combination of ligands may be used. Preferred combinations include: a) all
ligands are nitrogen donating ligands; b) all ligands are organometallic ligands; and c) the ligand at the
terminus of the conductive oligomer is a metallocene ligand and the ligand provided by the binding
ligand is a nitrogen donating ligand, with the other ligands, if needed, are either nitrogen donating .
ligands or metallocene ligands, or a mixture.

In addition, it may be desirable to use coordination sites of the transition metal ion for attachment of the
redox active molecule to either a binding ligand (directly or indirectly using a linker), to form a redox
active complex, or to the electrode (frequently using a spacer such as a conductive oligomer, as is
more fully described below), or both. Thus for example, when the redox active molecule is directly
joined to a binding ligand, one, two or more of the coordination sites of the metal ion may be occupied
by coordination atoms supplied by the binding ligand (or by the linker, if indirectly joined). In addition, or
alternatively, one or more of the coordination sites of the metal ion may be occupied by a spacer used
to attach the redox active molecule to the electrode.

In addition to transition metal complexes, other organic electron donors and acceptors may be used in
the invention. These organic molecules include, but are not limited to, riboflavin, xanthene dyes, azine
dyes, acridine orange, tyAMimethyl-2,7-diazapyrenium dichloride (DAP 2 *), methyMologen, ethidium
bromide, quinones such as N.N'-dimethylanthrafrl ,9-de£6,5,1 0-<fe'f)ditsoquinoline dichloride
(ADIQ 2 *); porphyrins ([meso-tetrakis(N-methyl-x-pyridinium)porphyrin tetrachloride], varlamine blue B
hydrochloride, Bindschedler's green; 2,6-dichloroindophenol, 2,6-dibromophenolindophenol; Brilliant
crest blue (3-amino-9-dimethyl-amino-10-methylphenoxyazine chloride), methylene blue; Nile blue A
(aminoaphthodiethylaminophenoxazine sulfate), indigo-5,5\7,7Metrasulfonic acid, indigo-5,5\7-
trisulfonic acid; phenosafranine, indigo-5-monosulfonic acid; safranine T; bis(dimethylglyoximato)-
iron(ll) chloride; induline scarlet, neutral red, anthracene, coronene, pyrene, 9-phenylanthracene,
rubrene, binaphthyl, DPA, phenothiazene, fluoranthene, phenanthrene, chrysene, 1,8-diphenyM ,3,5,7-
octatetracene, naphthalene, acenaphthalene, perylene, TMPD and analogs and substituted derivatives
of these compounds.

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In one embodiment, the electron donors and acceptors are redox proteins as are known in the art.
However, redox proteins in many embodiments are not preferred.

The choice of the specific electron transfer moieties will be influenced by the type of electron transfer
5 detection used, as is generally outlined below.

In some embodiments, as is outlined below, the redox active molecule is actually the analyte to be
detected; for example, when redox active proteins such as metalloenzymes, cytochrome c, etc. are to
be detected, they may serve as the redox active molecule. Alternatively, some metal analytes,
1 0 particularly heavy metals, can also serve as the redox active molecule, in general with chelating iigands
as is described herein; see for example Figure 6.

Generally, the target analyte binds to a redox active complex. By "redox active complex" herein is
meant a complex comprising at least one redox active molecule and at least one binding ligand, which,
15 as more fully described below, may be associated in a number of different ways. In some cases, the
binding ligand may also be a redox active molecule. By "binding ligand" or grammatical equivalents
herein is meant a compound that is used to probe for the presence of the target analyte, and that will
bind to the analyte.

20 As will be appreciated by those in the art, the composition of the binding ligand will depend on the
composition of the target analyte. Binding Iigands for a wide variety of analytes are known or can be
readily found using known techniques. For example, when the analyte is a protein, the binding Iigands
include proteins (particularly including antibodies or fragments thereof (FAbs, etc.)) or small molecules.
When the analyte is a metal ion, the binding ligand generally comprises traditional metal ion Iigands or

25 chelators, which together form the redox active molecule. Preferred binding ligand proteins include
peptides. For example, when the analyte is an enzyme, suitable binding Iigands include substrates and
inhibitors. Antigen-antibody pairs, receptor-ligands, and carbohydrates and their binding partners are
also suitable analyte-binding ligand pairs. The binding ligand may be nucleic acid, when nucleic acid
binding proteins are the targets; alternatively, as is generally described in U.S. Patents 5,270,163,

30 5,475,096, 5,567,588, 5,595,877, 5,637,459, 5,683,867,5,705,337, and related patents, hereby

incorporated by reference, nucleic acid "aptomers" can be developed for binding to virtually any target
analyte. Similarly, there is a wide body of literature relating to the development of binding partners
based on combinatorial chemistry methods. In this embodiment when the binding ligand is a nucleic
acid, preferred compositions and techniques are outlined in PCT US97/20014, hereby incorporated by

35 reference.

By "nucleic add" or "oligonucleotide" or grammatical equivalents herein means at least two nucleotides
covalently linked together. A nucleic add of the present invention will generally contain phosphodiester
bonds, although in some cases, as outlined below, nucleic acid analogs are included that may have

SUBSTITUTE SHEET (RULE 26)

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alternate backbones, comprising, for example, phosphoramlde (Beaucage et al M Tetrahedron
49(10):1925 (1993) and references therein; Letsinger, J. Org. Chem. 35:3800 (1970); Sprinzl et al.,
Eur. J. Biochem. 81 :579 (1977); Letsinger et at., Nucl. Acids Res. 14:3487 (1986); Sawai et al t Chem.
Lett. 805 (1 984), Letsinger et al., J. Am. Chem. Soc. 1 1 0:4470 (1988); and Pauwels et ai„ Chemica

5 Scripta 26:141 91986)), phosphorothioate (Mag etal., Nucleic Acids Res. 19:1437 (1991); and U.S.
Patent No. 5,644,048), phosphorodithioate (Briu et aL, J, Am. Chem. Soc. 1 1 1 :2321 (1 989), 0-
methylphophoroamidite linkages (see Eckstein, Oligonucleotides and Analogues: A Practical Approach,
Oxford University Press), and peptide nucleic acid backbones and linkages (see Egholm, J. Am. Chem.
Soc. 114:1895 (1992); Meier et al., Chem. Int. Ed. Engl. 31:1008 (1992); Nielsen, Nature, 365:566

10 (1993); Carisson et al., Nature 380:207 (1996), ail of which are incorporated by reference). Other
analog nucleic adds include those with positive backbones (Denpcy et al., Proc. Natl. Acad. Sci. USA
92:6097 (1995); non-ionic backbones (U.S. Patent Nos. 5,386,023, 5,637,684, 5,602,240, 5,216,141
and 4,469,863; Kiedrowshi et al., Angew. Chem. Intl. Ed. English 30:423 (1991); Letsinger et al., J. Am.
Chem. Soc. 110:4470 (1988); Letsinger et al., Nucleoside & Nucleotide 13:1597 (1994); Chapters 2

1 5 and 3, ASC Symposium Series 580, "Carbohydrate Modifications in Antisense Research", Ed. Y.S:

Sanghui and P. Dan Cook; Mesmaeker et al., Bioorganic & Medicinal Chem. Lett. 4:395 (1994); Jeffs et
al., J. Biomolecular NMR 34:17 (1994); Tetrahedron Lett. 37:743 (1996)) and non-ribose backbones,
including those described in U.S. Patent Nos. 5,235,033 and 5,034,506, and Chapters 6 and 7, ASC
Symposium Series 580, "Carbohydrate Modifications in Antisense Research", Ed. Y.S. Sanghui and P.

20 Dan Cook. Nucleic acids containing one or more carbocyclic sugars are also included within the
definition of nucleic acids (see Jenkins et aL, Chem. Soc. Rev. (1995) pp1 69-176). Several nucleic
acid analogs are described in Rawis, C & E News June 2, 1997 page 35. All of these references are
hereby expressly incorporated by reference. These modifications of the ribose-phosphate backbone
may be done to facilitate the addition of RAMs or conductive oligomers, or to increase the stability and

25 half-life of such molecules in physiological environments.

As will be appreciated by those in the art, all of these nucleic acid analogs may find use in the present
invention. In addition, mixtures of naturally occurring nucleic acids and analogs can be made; for
example, at the site of conductive oligomer or RAM attachment, an analog structure may be used.
30 Alternatively, mixtures of different nucleic acid analogs, and mixtures of naturally occuring nucleic acids
and analogs may be made.

In a preferred embodiment, the binding of the target analyte to the binding Hgand is specific, and the
binding ligand is part of a binding pair. By "specifically bind" herein is meant that the ligand binds the
35 analyte, with specificity sufficient to differentiate between the analyte and other components or

contaminants of the test sample. However, as will be appreciated by those in the art, rt will be possible
to detect analytes using binding which is not highly specific; for example, the systems may use different
binding Hgands, for example an array of different ligands, and detection of any particular analyte is via
its "signature" of binding to a panel of binding ligands, similar to the manner in which "electronic noses"

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work. This finds particular utility in the detection of chemical analytes. The binding should be sufficient
to remain bound under the conditions of the assay, including wash steps to remove non-specific
binding. In some embodiments, for example in the detection of certain biomolecules, the
disassociation constants of the analyte to the binding ligand will be less than about 10^-1 (T 6 M"\ with
less than about 10* 5 to 10* W being preferred and less than about 1 0 7 -lO* W being particularly
preferred.

Together, when present, the redox active molecule and the binding ligand comprise a redox active
complex. As mentioned above, in some cases the binding ligand is the redox active molecule, and thus
the redox active complex comprises the redox active binding ligand. Furthermore, in some
embodiments, the target analyte is a redox active molecule, such as a metal ion or a metalloenzyme,
etc.; in this case, a separate redox active molecule need not be used. In addition, there may be more
than one binding ligand or redox active molecule per redox active complex, as is generally outlined
below. The redox active complex may also contain additional moieties, such as cross-linking agents,
labels, etc., and linkers for attachment to the electrode. The addition (generally via non-covalent
binding, although as outlined herein, some interactions may be considered covalent, or post-binding
covalent attachment may occur, for example through the use of cross-finking agents) of the target
analyte to the redox active complex forms an assay complex. By "assay complex" herein is meant the
complex of components, including target analytes, binding ligands and redox active molecules, that
allows detection. The composition of the assay complex depends on the use of the different
component outlined herein.

In some embodiments, as is outlined below, the redox active complex is soluble. However, in a
preferred embodiment, at least one component of the assay complex is covalently attached to an
electrode. In a preferred embodiment, it is generally a component of the redox active complex that is
attached; that is, target analytes are not generally covalently attached to the electrode. That is, either
the redox active molecule or the binding ligand is covalently attached to the electrode. By "electrode"
herein is meant a conductive or semi-conductive composition, which, when connected to an electronic
control and detection device, is able to transmit electrons to or from a RAM either in solution or on its
surface. Thus, an electrode is an electron transfer moiety as described herein. Preferred electrodes
are known in the art and include, but are not limited to, certain metals and their oxides, including gold;
platinum; palladium; silicon; aluminum; metal oxide electrodes including platinum oxide, titanium oxide,
tin oxide, indium tin oxide, palladium oxide, silicon oxide, aluminum oxide, molybdenum oxide (Mo 2 0<j),
tungsten oxide (WOJ and ruthenium oxides; and carbon (including glassy carbon electrodes, graphite
and carbon paste). Preferred electrodes include gold, silicon, carbon and metal oxide electrodes.

The electrodes described herein are depicted as a flat surface, which is only one of the possible
conformations of the electrode and is for schematic purposes only. The conformation of the electrode
will vary with the detection method used. For example, flat planar electrodes may be preferred for

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optical detection methods, or when arrays of binding ligands are made, thus requiring addressable
locations for both synthesis and detection. Alternatively, for single probe analysis, thfe electrode may be
in the form of a tube, with the conductive oligomers and binding ligands bound to the inner surface. This
allows a maximum of surface area containing the target analytes to be exposed to a small volume of
sample.

The systems of the invention may take on any number of configurations, as outlined below.

In a preferred embodiment, the system is used to detect pollutants, such as organic pollutants, as is
1 0 depicted below in System 1 :

System 1

Pi — X F2 — TG organic

pollutant

F 1 X F 2 RAM ►

F, X F 2 TG

Ft _ x _ F2 _ TG |

Fj X F 2 RAM0

F, X F 2 — TG 0

In System 1 , as is described below, the hatched marks indicate an electrode, and there is preferably a
20 monolayer on the surface. F, is a linkage that allows the covalent attachment of the electrode and the
conductive oligomer or insulator, including bonds, atoms or linkers such as is described herein, for
example as "A", defined below. F 2 ts a linkage that allows the covalent attachment of the conductive
oligomer or insulator, and may be a bond, an atom or a linkage as is herein described. F 2 may be part
of the conductive oligomer, part of the insulator, part of the terminal group, part of the redox active
25 complex or component, or exogenous to both, for example, as defined herein for "Z\ X is a spacer
(conductive oligomer, passivation agent or insulator, as required). RAM is a redox active molecule. TG
is a terminal group, which may be chosen to influence the association of the target pollutant, such as an
organic pollutant Thus for example in this embodiment TG may be hydrophobic. The association of
the pollutant on the surface will affect the local environment of the RAM, for example potentially by
30 changing the Eo of the RAM or the solvent reorganization energy, and thus results in a change in the
faradaic impedance of the system in the presence of the analyte. The association in this case is not
specific for a particular analyte.

Systems 2, 3, 4 and 5 depict a similar situation except that a specific interaction is exploited. Thus, the
35 target analyte will bind to the binding ligand specifically, and is generally targe as compared to the
binding ligand and RAM. Upon binding, the local environment of the RAM Is affected, for example
potentially by changing the £<, of the RAM or the solvent reorganization energy, and thus results in a
change in the faradaic impedance of the system in the presence of the analyte. The target analyte in
these cases could be protein, a cell, etc. In addition, any or all of these systems may be used with co-

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redoxants, as described below. Upon binding of the target analyte, the access of the co-redoxant to the
RAM is restricted, thus resulting in either a different signal or a loss in signal, or both, in addition, as for
all the systems depicted herein, the order or proximity of the individual molecules of the monolayer is
not determinative.

System 2

-F, X F 2 TG

"Fi X F 2 RAM

-F, X F 2 TG

target
analyte

2 TG

2 RAM

-F, X-

-F, X

-F, X F 2 TG

-F, X F 2 B-«

In System 2, there may be more than one RAM per binding ligand (BL); that is, the ratio of RAM to BL
15 on the surface (depending on the relative size of the target analyte) may range from 1 :1 to over 1 00:1 .
This allows an amplification of signal, in that more than one RAM is used to detect a single target
analyte.

System 3

Ft X F 2 — TG

-f,— x— H

^RAM
-F, X F 2 — TG

target
analyte

-F t — X-

-F 2 — TG
RAM

-F t X F 2 — TG

"Fi X F 2 TG

System 4

target

-X F 2 BL— RAM ana| y te

-F 2 — TG

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System 5

System 6 depicts a system in which binding of a target analyte theoretically affects the between the
RAM and the electrode:

System 6

/
/

-F, X F=2 TG BL

-Fi X Fj

target
analyte

-TG

-RAM

/
/

-F 1 X Fj TG BL

-F, X Fj L

-Fi X F 2 TG

-RAM

System 7 depicts a similar situation, except that the binding ligand is inherent in the attachment of the
RAM to the electrode; for example, it may be a peptide or nucleic acid to which the analyte binds:

System 7

/
/

-Fi — X F 2 — TG

-F 1 X F=2 BH

target >
analyte /

-RAM

[=□ /

"Fi X Fj — TG

-F t X Fj — TG

— Bl

-RAM

-F t X F2 — TG

System 8 depicts a situation in which the analyte also serves as the redox active molecule; this is
particularly useful in the detection of metal ions, for example heavy metal ions, which are toxic. System
8 depicts a metal ion, M, and a metal ligand, ML, although as will be appreciated by those in the art, it is
quite possible to have the analyte in this case be a metailoprotein, with a BL, etc. As will be appreciated
by those in the art, System 8 is particularly useful in the detection of different metal ions, using an array
of different ligands; preferential binding of one metal over another would result in a panel of results that
can be correlated to metal ligand binding. Moreover, different metals may have different EgS and thus
give different signals.

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System 8

/
/
/

-F, — X F2 — TG

-Fi — X F2 — ML

-Ft— X-

mctaJ

-F 1 — X F 2 — TG

-F, X Fy— Mr-

-Ft — X Fj— TG

10 System 9 depicts a competitive-type assay which relies on a decrease in signal for detection. In this
case, the target analyte is a ligand, for example carbon monoxide (CO), which are stronger ligands
(SMLs, i.e. have higher binding constants) for a particular metal than the weaker metal ligand (WML) of
the system.

System 9

/
/

-Ft — X F7 — TG

-Ft X Fz-WMk— M

-Fr-

-TG

strong metal,
ligand /

SML /

-Ft— X F 2 — TG

"Ft— X— F^-WML + M .„ SM

-Ft — X Fj — TG

System 10 depicts a similar type of assay, which results in a change in signal rather than a decrease in
signal. For example, E<, and A could both change as a result of a new ligand binding.

System 10

/
/

-Ft — X — F 2 — TG WML
1

-F, — X — Fr-ML— M--WML

strong metal
ligand /

SML /

-Ft — X — — TG WML

-Ft— X-

-TG

-Ft— X— f^-MU..|^-SM
"Ft — X — — TG

System 1 1 utilizes a change in the diffusion coefficient upon analyte binding for the change in faradaic
impedance and mass transfer. In this embodiment, when the ligands are not covalently attached to an
electrode, changes in the diffusion coefficient will alter the mass transfer impedance and thus the total
35 faradaic impedance. That is, in some circumstances the frequency response of a redox active complex
will be limited by its diffusion coefficient AJso, the charge transfer impedance may be altered by the
binding of an analyte. At high frequencies, a redox active complex may not diffuse rapidly enough to
reversibly transfer its electron to the electrode at a rate sufficient to generate a strong output signal. At

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low frequencies, the molecule has sufficient time to diffuse, and thus an output signal can be detected.
In this embodiment the use of monolayers is generally not preferred.

Thus, the result of binding to form an assay complex will generally alter the diffusion coefficient of the
redox active molecule. As a result the faradaic impedance will change. This effect will be greatest
when the binding partner is large in comparison to the redox active moiety; the redox active moiety will
go from being relatively small, and thus diffusing quickly, to relatively large upon binding into a complex,
and diffusing much more slowly; this results in the greatest changes and is thus preferred. Similarly,
binding partners of roughly equal size can also result in a detectable signal.

Alternatively, it is also possible that binding of the redox active moiety to its binding partner will cause a
decrease in size. For example, some protein structures, i.e. antibodies, may have "loose' ■
conformations that are sterically bulky, that lighten up" as a result of binding to its partner (\.e. an
antigen).

System 11

/
/
/
/

RAM — bl

target analyte

/
/

/T~N ~ /
/

RAM — Bfc —

System 1 2 is similar to systems 1 0 and 1 1 , as it is a sensor for different ligands, but it relies on a change
in ligands to result in a change in E<, of the system. A similar system may be used with two metals; that
is, Instead of adding strong metal ligands, a different metal, with different affinity for the ligands may be
added, resulting in a electrochemical change.

/
/
/
/

W , ML ,WML
WML---|Vf "-WML

WML WML

System 12

strong metal x
ligand y

/
/

System 13 is a variation on previous systems, except that the RAM and the BL are closely associated or
linked.

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System 13

-X F 2 TG

-X F 2 <

-X F 2 TG

■ RAM
•BL

target
analyte

-F, X F 2 TG

-Ft X F 2 <

-F, X F 2 — TG

• RAM /T-K

10 System 14 results in changes in faradaic impedance as a result of changes in E<, or H^. In this case,
the binding ligand will self-associate in some way, bringing the RAM into closer proximity to the
electrode. For example, the binding ligand may be a nucleic acid (for example for the detection of a
nucleic acid binding protein) or a protein (for example for the detection of proteins that inhibit or bind the
binding ligand protein. Upon binding of the target, for example a protein, the conformation and thus the

15 local environment of the RAM changes, resulting in a detectable signal. System 15 could also be run in
"reverse", wherein the association of the analyte brings the RAM into proximity of the surface.

System 14

A
/

-F 1 — X F 2 — TG

-F,— X F 2

-F, X F 2 — TG

/
/

target nucleic
add

-F,— X

-TG

'RAM

25 System 1 5 uses two binding ligands, BL1 and BL2, which may be the same or different, to alter the
environment of the RAM. It may be desirable to have one of the binding ligands be a somewhat
•generic" binding ligand. Changes in Eo and/or impedance will result in a detectable signal.

System 15

-TG

-F 2 — TG
-F 2 — BL,

-BL 2

RAM

System 16 also relies on a decrease in signal. In this embodiment, a target analyte is used that will bind
the metal ion-binding ligand complex in such a way as to render the metal unavailable to serve as a
redox active molecule.

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/
/
/
/

System 16

M — BL

System 17 utilizes a change in metal ion affinity to a particular binding ligand to detect a change in the
signal based on a different metal being present (resulting in a different EJ.
10 System17

-F, X F 2 — TG

-Fi X F 2 — BL— M t

~F 1 X F 2 TG

/
/

M 2

-Fi X F 2 TO

-F, X F 2 — BL— M 2 +

-F, X F 2 TG

System 18 is similar to System 9 and depicts a competitive-type assay for detecting a target analyte. In
System 1 5 t a covalently attached target analyte or target analog (TA) is competed off of the binding
20 ligand by the addition of the target analyte, resulting in a decrease in signal.

System 18

/
/

-F, X F? — TG «WTA

-F, X F 2 — Bt— TA— RAM

-F, X F 2 — TG

/
/
/

-F, X F 2 — TG

-F, X Fj — Bt: - -TA +RAM

-F 1 X F 2 — TG

30 System 1 9 is a mixture of Systems 2 and 1 8 f where the replacement of a bulky analog (TA) by a
smaller target analyte (T) results in a different signal. For example, co-redoxant reactions could now
occur. Alternatively, monolayers with "holes', that would allow current flow in the absence of the analog
but do not in its presence, could also be used.

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System 19

/
/
/

-F t X F 2 — TG

-Ft X F 2 — RAM

-F, X F 2 — TG

-F, X F 2 BL---

"F, X F 2 — TG

-Ft X F 2 — RAM

-Pi X F 3 — TG

-F, X F 3 BL---[""t"]

10 System 20 depicts a two electrode system in a competitive-type assay. This is useful in that it allows
detection of an increase in signal on the second electrode, which is generally preferable to the loss of <
signal.

System 20

-X F 2 — TG

^ — x — f^ bl,--<^^ — RAM C1

F2— TG

-X F 2 — TG

R
M

As will be appreciated by those in the art, System 20 may also be configured in several different ways.
BL1 and BL2 may have different affinities for the same site on the target analyte or analog, or bind to
different sites. Similarly, the other systems may also be run in two electrode systems.

In addition, it is possible to use systems like those depicted above in several other embodiments. For
example, since heat will change the faradalc impedance, the systems above could be used as a heat
sensor. Similarly, attachment of the RAM to the electrode using a labile or cleavable bond can allow
sensing of the cleaving agent based on a decrease in signal; for example, photolabile bonds can be
35 used to detect light (uv); substrates can be used to sense enzymes (proteases, nucleases,

carbohydrases, lipases, etc.) or other cleaving agents, such as drugs that cut nudeic acids, etc.

In the systems described above, the redox active complex is covalently attached to the electrode. This
may be accomplished in any number of ways, as will be apparent to those in the art. In a preferred

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embodiment, one or both of the redox active molecule and the binding ligand are attached, via a
spacer, to the electrode, using the techniques and compositions outlined below. By "spacer" herein is
meant a moiety which holds the redox active complex off the surface of the electrode. In a preferred
embodiment, the spacer used to attach the redox active molecule is a conductive oligomer as outlined
5 herein, although suitable spacer moieties include passivation agents and insulators as outlined below.
The spacer moieties may be substantially non-conductive. In general, the length of the spacer is as
outlined for conductive polymers and passivation agents. As will be appreciated by those in the art, if
the spacer becomes too long, the electronic coupling between the redox active molecule and the
electrode will decrease rapidly.

In a preferred embodiment, the redox active molecule will be attached via a conductive oligomer, such
that detection of changes in faradaic impedance as between the redox active molecule and the
electrode can be detected. Other components of the system may be attached using other spacers; for
example, when the binding ligand and the redox active molecule are attached separately, as is
1 5 generally depicted in System 2, the binding ligand may be attached via a non-conductive oligomer
spacer.

In a preferred embodiment, the spacer is a conductive oligomer. By "conductive oligomer* herein is
meant a substantially conducting oligomer, preferably linear, some embodiments of which are referred
20 to in the literature as 'molecular wires".

By "conductive oligomer" herein is meant a substantially conducting oligomer, preferably linear, some
embodiments of which are referred to in the literature as 'molecular wires". By "substantially
conducting" herein is meant that the rate of electron transfer through the conductive oligomer is

25 generally not the rate limiting step in the detection of the target analyte, although as noted below,
systems which use spacers that are the rate limiting step are also acceptable. Stated differently, the
resistance of the conductive oligomer is less than that of the other components of the system.
Generally, the conductive oligomer has substantially overlapping n-orbitals, i.e. conjugated n-orbitals,
as between the monomelic units of the conductive oligomer, although the conductive oligomer may

30 also contain one or more sigma (o) bonds. Additionally, a conductive oligomer may be defined
functionally by its ability to pass electrons into or from an attached component. Furthermore, the
conductive oligomer is more conductive than the insulators as defined herein.

In a preferred embodiment, the conductive oligomers have a conductivity, S, of from between about 10"
35 6 to about 10 4 O^cnr 1 , with from about 10* to about 10 3 O^cm* 1 being preferred, with these S values
being calculated for molecules ranging from about 20A to about 200A. As described below, insulators
have a conductivity S of about 1 0" 7 Or'cnr 1 or lower, with less than about 1 0* Q'cnr 1 being preferred.
See generally Gardner et ah, Sensors and Actuators A 51 (1995) 57-66, incorporated herein by
reference.

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Desired characteristics of a conductive oligomer include high conductivity, sufficient solubility in organic
solvents and/or water for synthesis and use of the compositions of the invention, and preferably
chemical resistance to reactions that occur i) during synthesis of the systems of the
invention, il) during the attachment of the conductive oligomer to an electrode, or iii) during test assays.

The oligomers of the invention comprise at least two monomeric subunits, as described herein. As is
described more fully below, oligomers include homo- and hetero-oligomers, and include polymers.

In a preferred embodiment, the conductive oligomer has the structure depicted in Structure 1 :
10 Structure 1

1 5 As will be understood by those in the art, all of the structures depicted herein may have additional
atoms or structures; i.e. the conductive oligomer of Structure 1 may be attached to redox active
molecules such as electrodes, transition metal complexes, organic electron transfer moieties, and
metaliocenes, and to binding ligands, or to several of these. Unless otherwise noted, the conductive
oligomers depicted herein will be attached at the left side to an electrode; that is, as depicted in

20 Structure 1 , the left "Y" is connected to the electrode as described herein and the right "V, if present, is
attached to the redox active complex, either directly or through the use of a linker, as is described
herein.

In this embodiment, Y is an aromatic group, n is an integer from 1 to 50, g is either 1 or zero, e is an
25 integer from zero to 10, and m is zero or 1 . When g is 1 , B-D is a conjugated bond, preferably selected
from acetylene, alkene, substituted alkene, amide, azo, -ON- (including -N=C-, -CR=N- and -N=CR-),
-Si=Sh and -Si=C- (including -OSh -Si=CR- and -CR=Si-). When g is zero, e is preferably 1 , D is
preferably carbonyl, or a heteroatom moiety, wherein the heteroatom is selected from oxygen, sulfur,
nitrogen or phosphorus. Thus, suitable heteroatom moieties include, but are not limited to, -NH and -
30 NR, wherein R is as defined herein; substituted sulfur; sulfonyi (-S0 2 -) sulfoxide (-SO-); phosphine oxide
(-PO- and -RPO-); and thiophosphine (-PS- and -RPS-). However, when the conductive oligomer is to
be attached to a gold electrode, as outlined below, sulfur derivatives are not preferred.

By "aromatic group" or grammatical equivalents herein is meant an aromatic monocyclic or polycyciic
35 hydrocarbon moiety generally containing 5 to 14 carbon atoms (although larger polycyciic rings
structures may be made) and any carbocylic ketone or thioketone derivative thereof, wherein the
carbon atom with the free valence is a member of an aromatic ring. Aromatic groups include arylene
groups and aromatic groups with more than two atoms removed. For the purposes of this application
aromatic includes heterocycle. "Heterocycle" or "heteroaryr means an aromatic group wherein 1 to 5

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of the indicated carbon atoms are replaced by a heteroatom chosen from nitrogen, oxygen, sulfur,
phosphorus, boron and silicon wherein the atom with the free valence is a member of an aromatic ring,
and any heterocyclic ketone and thioketone derivative thereof. Thus, heterocycle includes thienyl, furyi,
pyrrolyl, pyrimidinyl, oxaiyi, indolyi, purinyl, quinolyl, isoquinolyl, thiazolyi, imidozyl, etc.
5 '

Importantly, the Y aromatic groups of the conductive oligomer may be different, i.e. the conductive
oligomer may be a heterooiigomer. That is, a conductive oligomer may comprise a oligomer of a single
type of Y groups, or of multiple types of Y groups. Thus, in a preferred embodiment, when a barrier
monolayer is used as is described below, one or more types of Y groups are used in the conductive

1 0 oligomer within the monolayer with a second type(s) of Y group used above the monolayer level. Thus,
as is described herein, the conductive oligomer may comprise Y groups that have good packing
efficiency within the monolayer at the electrode surface, and a second type(s) of Y groups with greater
flexibility and hydrophilicity above the monolayer level to facilitate target analyte binding. For example,
unsubstituted benzyl rings may comprise the Y rings for monolayer packing, and substituted benzyl

1 5 rings may be used above the monolayer. Alternatively, heterocylic rings, either substituted or

unsubstituted, may be used above the monolayer. Additionally, in one embodiment, heterobligomers
are used even when the conductive oligomer does not extend out of the monolayer.

The aromatic group may be substituted with a substitution group, generally depicted herein as R. R
20 groups may be added as necessary to affect the packing of the conductive oligomers, i.e. when the
conductive oligomers form a monolayer on the electrode, R groups may be used to alter the
association of the oligomers in the monolayer. R groups may also be added to 1) alter the solubility of
the oligomer or of compositions containing the oligomers; 2) alter the conjugation or electrochemical
potential of the system; and 3) alter the charge or characteristics at the surface of the monolayer.

In a preferred embodiment, when the conductive oligomer is greater than three subunits, R groups are
preferred to increase solubility when solution synthesis is done. However, the R groups, and their
positions, are chosen to minimally effect the packing of the conductive oligomers on a surface,
particularly within a monolayer, as described below. In general, only small R groups are used within the

30 monolayer, with larger R groups generally above the surface of the monolayer. Thus for example the
attachment of methyl groups to the portion of the conductive oligomer within the monolayer to increase
solubility is preferred, with attachment of longer alkoxy groups, for example, C3 to C1 0, is preferably
done above the monolayer surface. In general, for the systems described herein, this generally means
that attachment of sterically significant R groups is not done on any of the first three oligomer subunits,

35 depending on the length of the insulator molecules.

Suitable R groups include, but are not limited to, hydrogen, aikyl, alcohol, aromatic, amino, amido, nitro,
ethers, esters, aldehydes, sulfonyl, silicon moieties, halogens, sulfur containing moieties, phosphorus
containing moieties, and ethylene glycols. In the structures depicted herein, R is hydrogen when the

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position is unsubstituted. It should be noted that some positions may allow two substitution groups, R
and R\ in which case the R and R' groups may be either the same or different.

By "alky! group" or grammatical equivalents herein is meant a straight or branched chain alkyl group,
5 with straight chain alkyl groups being preferred. If branched, it may be branched at one or more
positions, and unless specified, at any position. The alkyl group may range from about 1 to about 30
carbon atoms (C1 -C30), with a preferred embodiment utilizing from about 1 to about 20 carbon atoms
(C1 -C20), with about C1 through about C1 2 to about C1 5 being preferred, and C1 to C5 being
particularly preferred, although in some embodiments the alkyl group may be much larger. Also
1 0 included within the definition of an alkyl group are cycloalkyl groups such as C5 and C6 rings, and
heterocyclic rings with nitrogen, oxygen, sulfur or phosphorus. Alkyl also includes heteroalkyl, with
heteroatoms of sulfur, oxygen, nitrogen, and silicone being preferred. Alkyl includes substituted alkyl
groups. By "substituted alkyl group" herein is meant an alkyl group further comprising one or more
substitution moieties "R", as defined above.

By "amino groups" or grammatical equivalents herein is meant -NH 2> -NHR and -NR 2 groups, with R
being as defined herein.

By "nitro group" herein is meant an -N0 2 group.

By "sulfur containing moieties" herein is meant compounds containing sulfur atoms, including but not
limited to, thia-, thio- and sulfa- compounds, thiols (-SH and -SR), and sulfides (-RSR-). By
"phosphorus containing moieties" herein is meant compounds containing phosphorus, including, but not
limited to, phosphines and phosphates. By "silicon containing moieties" herein is meant compounds
25 containing silicon.

By "ether" herein is meant an -OR group. Preferred ethers include alkoxy groups, with -O-CCH^Ch^
and -CMCH^CHj being preferred.

30 By "ester herein is meant a -COOR group.

By "halogen" herein is meant bromine, iodine, chlorine, or fluorine. Preferred substituted alkyls are
partially or fully halogenated alkyls such as CF 3 , etc.

35 By "aldehyde" herein is meant -RCOH groups.

By "alcohol" herein is meant -OH groups, and alky! alcohols -ROH.
By "amido" herein is meant -RCONH- or RCONR- groups.

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By "ethylene glycol" herein is meant a -(O-CHj-CH,),,- group, although each carbon atom of the
ethylene group may also be singly or doubly substituted, i.e. -(O-CRj-CR^-, with R as described above.
Ethylene glycol derivatives with other heteroatoms in place of oxygen (i.e. -(N-CH^-CHj)^ or -(S-CH 2 -
CHJn-, or with substitution groups) are also preferred.

Preferred substitution groups include, but are not limited to, methyl, ethyl, propyl, alkoxy groups such as
-0-(CH2) 2 CH 3 and -0-(CH 2 ) 4 CH 3 and ethylene glycol and derivatives thereof.

Preferred aromatic groups include, but are not limited to, phenyl, naphthyl, naphthalene, anthracene,
phenanthroline, pyrole, pyridine, thiophene, porphyrins, and substituted derivatives of each of these,
included fused ring derivatives.

In the conductive oligomers depicted herein, when g is 1 , B-D is a bond linking two atoms or chemical
moieties. In a preferred embodiment, B-D is a conjugated bond, containing overlapping or conjugated
n-orbitals.

Preferred B-D bonds are selected from acetylene (-C5C-, also called alkyne or ethyne), alkene (-
CH=CH-, also called ethylene), substituted alkene (-CR=CR- t -CH=CR- and -CR=CH-) ? amide (-NH-
CO- and -NR-CO- or -CO-NH- and -CO-NR-), azo (-N=N-), esters and thioesters (-CO-O-, -O-CO-, -
CS-O- and -O-CS-) and other conjugated bonds such as (-CH=N- t -CR=N-, -N=CH- and -N=CR-), (-
SiH=SiH-, -SiR^SiH-, -SiR=SiH-, and -SiR=SiR-), (-SiH=CH-, -SiR=CH-, -SiH=CR-, -SiR=CR-, -
CH=SiH-, -CR=SiH-, -CH=SiR-, and -CR=SiR-). Particularly preferred B-D bonds are acetylene,
alkene, amide, and substituted derivatives of these three, and azo. Especially preferred B-D bonds are
acetylene, alkene and amide. The oligomer components attached to double bonds may be in the trans
or cis conformation, or mixtures. Thus, either B or D may include carbon, nitrogen or silicon. The
substitution groups are as defined as above for R.

When g=0 in the Structure 2 conductive oligomer, e is preferably 1 and the D moiety may be carbonyl
or a heteroatom moiety as defined above.

As above for the Y rings, within any single conductive oligomer, the B-D bonds (or D moieties, when
g=0) may be all the same, or at least one may be different For example, when m is zero, the terminal
B-D bond may be an amide bond, and the rest of the B-D bonds may be acetylene bonds. Generally,
when amide bonds are present, as few amide bonds as possible are preferable, but in some
embodiments all the B-D bonds are amide bonds. Thus, as outlined above for the Y rings, one type of
B-D bond may be present in the conductive oligomer within a monolayer as described below, and
another type above the monolayer level, to give greater flexibility.

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In the structures depicted herein, n is an integer from 1 to 50, although longer oligomers may also be
used (see for example Schumm et al. f Angew. Chem. Int. Ed. Engl. 1994 33(1 3):1 360). Without
being bound by theory, it appears that for efficient binding of target analytes on a surface, the binding
should occur at a distance from the surface, i.e. the kinetics of binding increase as a function of the
5 distance from the surface, particularly for larger analytes. Accordingly, the length of the conductive
oligomer is such that the closest portion of the redox active complex is positioned from about 6A to
about 100A (although distances of up to 500A may be used) from the electrode surface, with from
about 25A to about 60A being preferred. In a preferred embodiment, the length of the conductive
oligomer is greater than (CH^ linkers, with greater than (CHJ, 0 being preferred and greater than about
1 0 (CH^ being particularly preferred. Accordingly, n will depend on the size of the aromatic group, but
generally will be from about 1 to about 20, with from about 2 to about 1 5 being preferred and from
about 3 to about 10 being especially preferred.

In the structures depicted herein, rn is either 0 or 1. That is, when m is 0, the conductive oligomer may
1 5 terminate in the B-D bond or D moiety, i.e. the D atom is attached to the component of the redox active
complex either directly or via a linker. In some embodiments, there may be additional atoms, such as a
linker, attached between the conductive oligomer and the component of the redox active complex to
which it is attached. Additionally, as outlined below, the D atom may be a nitrogen atom of a redox
active complex, for example an amine of a protein. Alternatively, when m is 1 , the conductive oligomer
20 may terminate in Y, an aromatic group, i.e. the aromatic group is attached to the redox active complex
or linker.

As will be appreciated by those in the art, a large number of possible conductive oligomers may be
utilized. These include conductive oligomers falling within the Structure 1 and Structure 8 formulas, as

25 well as other conductive oligomers, as are generally known in the art, including for example,

compounds comprising fused aromatic rings or TeflorrfNike oligomers, such as -(CF^-, -(CHF) n - and -
(CFR) n -. See for example, Schumm et al., angew. Chem. Intl. Ed. Engl. 33:1361 (1994);Grosshenny et
al. t Platinum Metals Rev, 40(1):26-35 (1996); Tour, Chem. Rev. 96:537-553 (1996); Hsung et al.,
Organometallics 1 4:4808-481 5 (1 995; and references cited therein, all of which are expressly

30 incorporated by reference.

Particularly preferred conductive oligomers of this embodiment are depicted below:

Structure 2 is Structure 1 when g is 1 . Preferred embodiments of Structure 2 include: e is zero, Y is
pyrole or substituted pyrole; e is zero, Y is thiophene or substituted thiophene; e is zero, Y is furan or

Structure 2

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substituted furan; e is zero, Y is phenyl or substituted phenyl; e is zero, Y is pyridine or substituted
pyridine; e is 1 , B-D is acetylene and Y is phenyl or substituted phenyl (see Structure 4 below). A
preferred embodiment of Structure 2 is also when e is one, depicted as Structure 3 below:

Structure 3

Preferred embodiments of Structure 3 are: Y is phenyl or substituted phenyl and B-D is azo; Y is phenyl
1 0 or substituted phenyl and B-D is alkene; Y is pyridine or substituted pyridine and B-D is acetylene; Y is
thiophene or substituted thiophene and B-D is acetylene; Y is furan or substituted furan and B-D is
acetylene; Y is thiophene or furan (or substituted thiophene or furan) and B-D are alternating alkene
and acetylene bonds.

1 5 Most of the structures depicted herein utilize a Structure 3 conductive oligomer. However, any Structure
4 oligomers may be substituted with a Structure 1 , 2 or 8 oligomer, or other conducting oligomer, and
the use of such Structure 3 depiction is not meant to limit the scope of the invention.

Particularly preferred embodiments of Structure 3 include Structures 4, 5, 6 and 7, depicted below:
20 Structure 4

Particularly preferred embodiments of Structure 4 include: n is two, m is one, and R is hydrogen; n is
three, m is zero, and R is hydrogen; and the use of R groups to increase solubility.

Structures

35 When the B-D bond is an amide bond, as in Structure 5, the conductive oligomers are pseudopeptkJe
oligomers. Although the amide bond in Structure 5 is depicted with the carbonyl to the left, i.e. -CONH-,
the reverse may also be used, i.e. -NHCO-. Particularly preferred embodiments of Structure 5 include:
n is two, m is one, and R is hydrogen; n is three, m is zero, and R is hydrogen (in this embodiment the

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terminal nitrogen (the D atom) may be the nitrogen of the amino-modified ribose); and the use of R
groups to increase solubility.

Structure 6

Preferred embodiments of Structure 6 include the first n is two, second n is one, m is zero, and ail R
10 groups are hydrogen, or the use of R groups to increase solubility.

Structure 7

Preferred embodiments of Structure 7 include: the first n is three, the second n is from 1-3, with m being
either 0 or 1 , and the use of R groups to increase solubility.

In a preferred embodiment, the conductive oligomer has the structure depicted in Structure 8:

Structure 8

In this embodiment, C are carbon atoms, n is an integer from 1 to 50, m is 0 or 1 , J is a heteroatom
selected from the group consisting of nitrogen, silicon, phosphorus, sulfur, carbonyl or sulfoxide, and G
is a bond selected from alkane, alkene or acetylene, such that together with the two carbon atoms the

30 C-G-C group is an alkene (~CH=CH-), substituted alkene (-CR=CR-) or mixtures thereof (-CH=CR- or -
CR=CH-), acetylene (-C5C-), or alkane (-CRj-CRj-, with R being either hydrogen or a substitution
group as described herein). The G bond of each subunit may be the same or different than the G
bonds of other subunits; that is, alternating oligomers of alkene and acetylene bonds could be used,
etc. However, when G is an alkane bond, the number of alkane bonds in the oligomer should be kept

35 to a minimum, with about six or less sigma bonds per conductive oligomer being preferred. Alkene
bonds are preferred, and are generally depicted herein, although alkane and acetylene bonds may be
substituted in any structure or embodiment described herein as will be appreciated by those in the art

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In a preferred embodiment, the m of Structure 8 is zero. In a particularly preferred embodiment, m is
zero and G is an alkene bond, as is depicted in Structure 9:

Structure 9

The alkene oligomer of structure 9, and others depicted herein, are generally depicted in the preferred
10 trans configuration, although oligomers of cis or mixtures of trans and cis may also be used. As above,
R groups may be added to alter the packing of the compositions on an electrode, the hydrophilicity or
hydrophobicity of the oligomer, and the flexibility, i.e. the rotational, torsional or longitudinal flexibility of
the oligomer, n is as defined above.

15 In a preferred embodiment, R is hydrogen, although R may be also alkyl groups and polyethylene
glycols or derivatives.

In an alternative embodiment, the conductive oligomer may be a mixture of different types of oligomers,
for example of structures 1 and 8.

20 .

The conductive oligomers are covalently attached to a component of the redox active complex, either
the binding ligand, or the redox active molecule, or both, as is generally outlined in the systems
described above. By "covalently attached" herein is meant that two moieties are attached by at least
one bond, including sigma bonds, pi bonds and coordination bonds.

The method of attachment of the redox active complex to the spacer (also sometimes referred to herein
as an attachment linker, which may be either an insulator or conductive oligomer) will generally be done
as is known in the art, and will depend on both the composition of the attachment linker and the capture
binding ligand. In general, the redox active complexes are attached to the attachment linker through

30 the use of functional groups on each that can then be used for attachment Preferred functional groups
for attachment are amino groups, carboxy groups, oxo groups and thiol groups. These functional
groups can then be attached, either directly or indirectly through the use of a linker, sometimes depicted
herein as "Z\ Linkers are well known in the art; for example, homo-or hetero-bifunctional linkers as are
well known (see 1994 Pierce Chemical Company catalog, technical section on cross-linkers, pages

35 155-200, incorporated herein by reference). Preferred Z linkers include, but are not limited to, alkyl
groups (including substituted alkyl groups and alkyl groups containing heteroatom moieties), with short
alkyl groups, esters, amide, amine, epoxy groups and ethylene glycol and derivatives being preferred,
with propyl, acetylene, and alkene being especially preferred. Z may also be a sulfone group,
forming sulfonamide linkages.

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A preferred attachment of redox active molecules that are transition metal complexes utilizes either a
transition metal ligand (including coordination atoms) on the terminus of the conductive oligomer, that
serves to attach the redox active molecule to the conductive oligomer, as is generally depicted below in
Structures 1 0 and 1 1 . Both Structure 1 0 and 1 1 depict a structure 3 conductive oligomer, although
5 other oligomers may be used. Similarly, if a binding ligand is attached (for example as shown in System
4), the metal ligand can either be attached to the binding ligand (i.e. exogeneously added, for example
using a Z linker) or can be contributed by the binding ligand itself (for example, using a nitrogen of an
amino acid side chain).

Structure 10

t° f \/\/\ ^optional BL

15 Structure 11

-{ y - b — t-( Y W z )r\

20 i

L are the co-ligands, that provide the coordination atoms for the binding of the metal ion. As will be
appreciated by those in the art, the number and nature of the co-ligands will depend on the coordination
number of the metal ion. Mono-, di- or polydentate co-ligands may be used at any position. Thus, for
example, when the metal has a coordination number of six, the L from the terminus of the conductive

25 oligomer, the L contributed from the binding ligand (if present) and r, add up to six. Thus, when the
metal has a coordination number of six, r may range from zero (when all coordination atoms are
provided by the other ligands) to five, when all the co-ligands are monodentate. Thus generally, r will
be from 0 to 8, depending on the coordination number of the metal ion and the choice of the other
ligands.

In one embodiment the metal ion has a coordination number of six and both the ligand attached to the
conductive oligomer and the ligand either attached or contributed by the binding ligand are at least
bidentate; that is, r is preferably zero, one (i.e. the remaining co-ligand is bidentate) or two (two
monodentate co-ligands are used).

As will be appreciated in the art, the co-ligands can be the same or different.

When one or more of the co-ligands is an organometaliic ligand, the ligand is generally attached via
one of the carbon atoms of the organometaliic ligand, although attachment may be via other atoms for

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heterocyclic ligands. Preferred organometallic Hgands include metallocene ligands, including
substituted derivatives and the metalloceneophanes (see page 1 174 of Cotton and Wilkenson, supra).

groups being preferred, such as pentamethylcyclopentadienyl, can be used to increase the stability of
the metallocene. In a preferred embodiment only one of the two metallocene ligands of a metallocene
are derivatized.

In this way, redox active complexes may be attached, including binding ligands comprising proteins,
lectins, nucleic acids, small organic molecules, carbohydrates, etc.

A preferred embodiment utilizes proteinaceous binding ligands. As is known in the art, any number of
techniques may be used to attach a proteinaceous binding ligand to an attachment linker, as is outlined
above for the attachment of a redox active complex to the spacer; see also figures 2 and 3. A wide
variety of techniques are known to add moieties to proteins. Similar techniques can be used to add the
binding ligand to the redox active molecule, for example as depicted in System 3, 4 or 5, as will be
appreciated by those in the art

A preferred embodiment utilizes nucleic acids as the binding ligand, with techniques outlined in PCT
US97/20014 being useful for attachment

One end of the attachment linker is linked to the redox active complex, and the other end (although as
will be appreciated by those in the art, it need not be the exact terminus for either) is attached to the
electrode. Thus, any of structures depicted herein may further comprise a redox active complex or
system component effectively as a terminal group.

The covalent attachment of the conductive oligomer containing the redox active molecule (and the
attachment of other spacer molecules) may be accomplished in a variety of ways, depending on the
electrode and the conductive oligomer used. Generally, some type of linker is used, as depicted below
as "A* in Structure 12, where X is the conductive oligomer, and the hatched surface is the electrode:

Structure 12

In this embodiment, A is a Tinker or atom. The choice of "A" will depend in part on the characteristics of
the electrode. Thus, for example, A may be a sulfur moiety when a gold electrode is used.
Alternatively, when metal oxide electrodes are used, A may be a silicon (silane) moiety attached to the

For example, derivatives of metallocene ligands such as methylcyclopentadienyl, with multiple methyl

•A X

RAM or BL

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oxygen of the oxide (see for example Chen et al. f Langmuir 10:3332-3337 (1994); Lenhard et al., J.
Electroanal. Chem. 78:195-201 (1977), both of which are expressly incorporated by reference). When
carbon based electrodes are used, A may be an amino moiety (preferably a primary amine; see for
example Deinhammer et al., Langmuir 10:1306-1313 (1994)). Thus, preferred A moieties include, but
5 are not limited to, silane moieties, sulfur moieties (including alky! sulfur moieties), and amino moieties.
In a preferred embodiment, epoxide type linkages with redox polymers such as are known in the art are
not used.

Although depicted herein as a single moiety, the conductive oligomer (and other spacers) may be
1 0 attached to the electrode with more than one "A" moiety; the "A" moieties may be the same or different.
Thus, for example, when the electrode is a gold electrode, and "A" is a sulfur atom or moiety, such as
generally depicted below in Structure 13, multiple sulfur atoms may be used to attach the conductive
oligomer to the electrode, such as is generally depicted below in Structures 14, 15 and 16. As will be
appreciated by those in the art, other such structures can be made. In Structures 14, 15 and 16, the A
1 5 moiety is just a sulfur atom, but substituted sulfur moieties may also be used.

Structure 14

-RAMorBL

Structure 15

-X RAMorBL

Structure 16

X RAMorBL

It should also be noted that similar to Structure 1 6, it may be possible to have a a conductive oligomer
terminating in a single carbon atom with three sulfur moities attached to the electrode.

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In a preferred embodiment, the electrode is a gold electrode, and attachment is via a sulfur linkage as
is well known in the art, i.e. the A moiety is a sulfur atom or moiety. Although the exact characteristics of
the gold-sulfur attachment are not known, this linkage is considered covalent for the purposes of this
invention. A representative structure is depicted in Structure 17. Structure 17 depicts the "A" linker as
5 comprising just a sulfur atom, although additional atoms may be present (i.e. linkers from the sulfur to
the conductive oligomer or substitution groups).

Structure 17

15 In a preferred embodiment, the electrode is a carbon electrode, i.e. a glassy carbon electrode, and
attachment is via a nitrogen of an amine group. A representative structure is depicted in Structure 18.
Again, additional atoms may be present, i.e. Z type linkers.

Structure 18

Structure 19

In Structure 19, the oxygen atom is from the oxide of the metal oxide electrode. The Si atom may also
35 contain other atoms, I.e. be a silicon moiety containing substitution groups.

Thus, in a preferred embodiment, electrodes are made that comprise conductive oligomers attached to
redox active complexes for the purposes of hybridization assays, as is more fully described herein. As
will be appreciated by those in the art, electrodes can be made that have a single species of binding

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ligand, i.e. for the detection of a single target analyte, or multiple binding ligand species, i.e. for the
detection of multiple target analytes.

In addition, as outlined herein, the use of a solid support such as an electrode enables the use of these
5 assays in an array form. The use of arrays such as oligonucleotide arrays are well known in the art,
and similar systems can be built herein. In addition, techniques are known for "addressing* locations
within an electrode array and for the surface modification of electrodes. Thus, in a preferred
embodiment, arrays of different binding ligands are laid down on the array of electrodes, each of which
are covalently attached to the electrode via a conductive linker. In this embodiment, the number of
1 0 different species of analytes may vary widely, from one to thousands, with from about 4 to about
100,000 being preferred, and from about 10 to about 10,000 being particularly preferred.

In a preferred embodiment, the electrode further comprises a passavation agent, preferably in the form
of a monolayer on the electrode surface. The efficiency of binding may increase when the target

1 5 analyte is at a distance from the electrode, and non-specific binding is decreased when a monolayer is
used. A passavation agent layer facilitates the maintenance of the target analyte away from the
electrode surface. In addition, a passavation agent serves to keep charge carriers away from the
surface of the electrode. Thus, this layer helps to prevent electrical contact between the electrodes and
the electron transfer moieties, or between the electrode and charged species within the solvent. Such

20 contact can result in a direct "short circuit" or an indirect short circuit via charged species which may be
present in the sample. Accordingly, the monolayer of passavation agents is preferably tightly packed in
a uniform layer on the electrode surface, such that a minimum of "holes" exist. Alternatively, the
passavation agent may not be in the form of a monolayer, but may be present to help the packing of the
conductive oligomers or other characteristics.

The passavation agents thus serve as a physical barrier to block solvent accesibility to the electrode.
As such, the passavation agents themselves may in fact be either (1) conducting or (2) nonconducting,
i.e. insulating, molecules. Thus, in one embodiment, the passavation agents are conductive oligomers,
as described herein, with or without a terminal group to block or decrease the transfer of charge to the
30 electrode. Other passavation agents include oligomers of -(CF^-, -(CHF) n - and -(CFR) n -. In a
preferred embodiment, the passavation agents are insulator moieties.

An "insulator is a substantially nonconducting oligomer, preferably linear. By "substantially
nonconducting" herein is meant that the rate of electron transfer through the insulator is the rate limiting
35 step of the transfer reaction. Stated differently, the electrical resistance of the insulator is higher than
the electrical resistance of the rest of the system. The rate of electron transfer through the insulator is
preferrably slower than the rate through the conductive oligomers described herein. It should be noted
however that even oligomers generally considered to be insulators still may transfer electrons, albeit at
a slow rate.

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In a preferred embodiment, the insulators have a conductivity, S, of about 1 0" 7 Q-'cm-' or lower, with
less than about 10* Q-'cm-' being preferred. See generally Gardner et al., supra.

Generally, insulators are alkyl or heteroalkyl oligomers or moieties with sigma bonds, although any
particular insulator molecule may contain aromatic groups or one or more conjugated bonds. By
•heteroalkyl' herein is meant an alkyl group that has at least one heteroatom, i.e. nitrogen, oxygen,
sulfur, phosphorus, silicon or boron included in the chain. Alternatively, the insulator may be quite '
similar to a conductive oligomer with the addition of one or more heteroatoms or bonds that serve to
inhibit or slow, preferably substantially, electron transfer.

The passavation agents, including insulators, may be substituted with R groups as defined herein to
alter the packing of the moieties or conductive oligomers on an electrode, the hydrophilicrty or
hydrophobicity of the insulator, and the flexibility, i.e. the rotational, torsional or longitudinal flexibility of
the insulator. For example, branched alkyl groups may be used. In addition, the terminus of the

15 passavation agent, including insulators, may contain an additional group to influence the exposed
surface of the monolayer. For example, there may be negatively charged groups on the terminus to
form a negatively charged surface to repel negatively charged species from non-specifically binding.
Similarly, for example as depicted in System 1 , hydrophobic groups can be used to attract hydrophobic
analytes, etc. Preferred passavation agent terminal groups include -NH ? , -OH. -COOH, -CH, ,

20 trimethylsilyl fJMS) and (polyethylene glycol, with the latter being particularly preferred.

The length of the passavation agent will vary as needed. As outlined above, it appears that binding is
more efficient at a distance from the surface. Thus, the length of the passavation agents is similar to
the length of the conductive oligomers, as outlined above. In addition, the conductive oligomers may be
25 basically the same length as the passavation agents or longer than them, resulting in the binding
ligands being more accessible to the solvent for binding of target analytes.

The monolayer may comprise a single type of passavation agent, including insulators, or different types.

Suitable insulators are known in the art, and include, but are not limited to, -(CHJ.-, -(CRH)„-, and -
(CRj)„-, ethylene glycol or derivatives using other heteroatoms in place of oxygen, i.e. nitrogen or sulfur
(sulfur derivatives are not preferred when the electrode is gold).

35 The passavation agents are generally attached to the electrode in the same manner as the conductive
oligomer, and may use the same 'A' linker as defined above.

The compositions of the invention are generally synthesized as outlined below, generally utilizing
techniques well known in the art

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The compositions may be made in several ways. A preferred method first synthesizes a conductive
oligomer attached to the binding ligand or redox active molecule, followed by attachment to the
electrode. The second component of the redox active complex may be added prior to attachment to
the electrode or after. Alternatively, the redox active complex may be made and then the completed
conductive oligomer added, followed by attachment to the electrode. Alternatively, the conductive
oligomer and monolayer (if present) are attached to the electrode first, followed by attachment of the
other components.

In a preferred embodiment, conductive oligomers are covaiently attached via sulfur linkages to the
electrode. However, surprisingly, traditional protecting groups for use of attaching molecules to gold
electrodes are generally not ideal for use in both synthesis of the compositions described herein and
inclusion in biomoiecule synthetic reactions. Accordingly, alternate methods for the attachment of
conductive oligomers to gold electrodes, utilizing unusual protecting groups, including ethylpyridine, and
trimethylsilylethyl as is described in PCT US97/20014. Briefly, in a preferred embodiment, the subunit
of the conductive oligomer which contains the sulfur atom for attachment to the electrode is protected
with an ethyl-pyridine or trimethylsilylethyl group. For the former, this is generally done by contacting
the subunit containing the sulfur atom (preferably in the form of a sulfhydryl) with a vinyl pyridine group
or vinyl trimethylsilylethyl group under conditions whereby an ethylpyridine group or trimethylsilylethyl
group is added to the sulfur atom.

This subunit also generally contains a functional moiety for attachment of additional subunits, and thus
additional subunits are attached to form the conductive oligomer. The conductive oligomer is then
attached to a component of the redox active complex. The protecting group is then removed and the
sulfur-gold covalent attachment is made. Alternatively, all or part of the conductive oligomer Is made,
and then either a subunit containing a protected sulfur atom is added, or a sulfur atom is added and
then protected. The conductive oligomer is then attached to a component of the redox active complex.
Alternatively, the conductive oligomer attached to the redox active complex component, and then either
a subunit containing a protected sulfur atom is added, or a sulfur atom is added and then protected.
Alternatively, the ethyl pyridine protecting group may be used as above, but removed after one or more
steps and replaced with a standard protecting group like a disulfide. Thus, the ethyl pyridine or
trimethylsilylethyl group may serve as the protecting group for some of the synthetic reactions, and then
removed and replaced with a traditional protecting group.

By "subunit" of a conductive polymer herein is meant at least the moiety of the conductive oligomer to
which the sulfur atom is attached, although additional atoms may be present, including either functional
groups which allow the addition of additional components of the conductive oligomer, or additional
components of the conductive oligonter. Thus, for example, when Structure 1 oligomers are used, a
subunit comprises at least the first Y group.

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A preferred method comprises 1) adding an ethyl pyridine or trimethylsilylethyl protecting group to a
sulfur atom attached to a first subunit of a conductive oligomer, generally done by adding a vinyl
pyridine or trimethylsilylethyl group to a sulfhydryl; 2) adding additional subunits to form the conductive
oligomer; 3) adding at least a first component of the redox active complex to the conductive oligomer; 4)
5 adding additional components as necessary; and 5) attaching the conductive oligomer to the gold
electrode.

The above method may also be used to attach passavation molecules to a gold electrode.

10 In a preferred embodiment, a monolayer of passavation agents is added to the electrode. Generally,
the chemistry of addition is similar to or the same as the addition of conductive oligomers to the
electrode, i.e. using a sulfur atom for attachment to a gold electrode, etc. Compositions comprising
monolayers in addition to the conductive oligomers covalently attached to components of the redox
active complex may be made in at least one of five ways: (1) addition of the monolayer, followed by

15 subsequent addition of the conductive oligomer- redox activecomplex; (2) addition of the conductive
oligomer-redox active complex followed by addition of the monolayer; (3) simultaneous addition of the
monolayer and conductive oligomer-redox active complex; (4) formation of a monolayer (using any of 1 ,
2 or 3) which includes conductive oligomers which terminate in a functional moiety suitable for
attachment of a redox active complex; or (5) formation of a monolayer which includes conductive

20 oligomers which terminate in a functional moiety suitable for synthesis, i.e. the redox active complex (for
example, the binding ligand) is synthesized on the surface of the monolayer as is known In the art
Such suitable functional moieties include, but are not limited to, nucleosides, amino groups, carboxyl
groups, protected sulfur moieties, or hydroxyl groups for phosphoramidite additions.

25 As will be appreciated by those in the art, electrodes may be made that have any combination of

components. Thus, a variety of different conductive oligomers or passavation agents may be used on a
single electrode.

Once made, the compositions find use in a number of applications, as described herein.

The compositions of the invention thus comprise assay complexes comprising a target analyte bound to
a redox active complex, wherein the complex comprises a binding ligand and a redox active molecule.
In a preferred embodiment, the ligand-analyte interaction is such that the environment of the redox
active molecule changes sufficiently upon binding to alter a measurable redox property of the redox
35 active molecule. For example, in antibody-antigen complexes, enzyme-substrate (or inhibitor)

complexes, other protein-protein interactions, etc., the redox active molecule is generally located within
or adjacent to the binding site or active site of the interaction, such that upon binding, the environment of
the redox active molecule changes. This may be due to a conformational change, a "shielding" of the
redox active molecule, new solvent accessibility of the redox active molecule, etc. Preferably, the redox

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active molecule is placed such that it does not inhibit the ligand-target binding but is affected by it In
general, the RAM is generally within less than 50A of the target anaiyte, with less than about 25A being
preferred, and less than 6-1 0 A being particularly preferred.

5 In general, changes in faradaic impedance are due to changes in the rate of electron transfer between
the RAM, generally through the conductive oligomer, to the electrode. As predicted by semiclassical
theory, changes in the rate of electron transfer can be due to changes in the intervening medium
(conceptually, changes in H^, changes in nuclear reorganization energy, A (the major component of
which is the solvent reorganization energy), changes in the driving force (-AG°; which is generally a

1 0 function of changes in the input signal, rather than changes in the system as a result of anaiyte binding),
changes in distance, according to the following equation;

k^T = (4n 3 /h 2 Xk 6 T) 1/2 (H AB ) 2 exp[(-AG 0 + A^/XkJ]

1 5 Thus, as generally discussed herein, changes in faradaic impedance are generally determined by
evaluating the changes in the rate and/or quantity of electron transfer between the RAM and the
electrode. Accordingly, changes in faradaic impedance are done by initiating electron transfer,
generally both in the absence and presence of the target anaiyte, and evaluating the generated signal,
which will be characteristic of either the absence or presence of the target anaiyte. In some

20 embodiments, for example in system 8, there may be little or no electron transfer in the absence of the
anaiyte. Other systems rely on changes in electron transfer rate or quantity on the basis of the
presence or absence of the target anaiyte.

Electron transfer is generally initiated electronically, with the application of at least a first input signal,
25 with voltage being preferred. A potential is applied to the assay complex. Precise control and

variations in the applied potential can be via a potentiostat and either a three electrode system (one
reference, one sample (or working) and one counter electrode) or a two electrode system (one sample
and one counter electrode). This allows matching of applied potential to peak potential of the system
which depends in part on the choice of RAMs and in part on the conductive oligomer used, the
30 composition and integrity of the monolayer, and what type of reference electrode is used. As described
herein, ferrocene is a preferred RAM.

In a preferred embodiment, a cc^reductant or co-oxidant (collectively, co-redoxant) is used, as an
additional electron source or sink. See generally Sato et al., Bull Chem. Soc. Jpn 66:1032 (1993);
35 Uosaki et at., Electrochimica Acta 36:1799 (1991); and Alleman et al. v J. Phys. Chem 100:17050

(1996); all of which are incorporated by reference. This finds-use when DC detection modes are used,
or slow AC, i.e. non-diffusion limited AC.

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In a preferred embodiment, an input electron source in solution is used in the initiation of electron
transfer, preferably when initiation and detection are being done using DC current or at AC frequencies
where diffusion is not limiting. In general, as will be appreciated by those in the art, preferred
embodiments utilize monolayers that contain a minimum of "holes", such that short-circuiting of the
system is avoided. This may be done in several general ways. In a preferred embodiment, an input
electron source is used that has a lower or similar redox potential than the RAM of the assay complex.
Thus, at voltages above the redox potential of the input electron source, both the RAM and the input
electron source are oxidized and can thus donate electrons; the RAM donates an electron to the
electrode and the input source donates to the RAM. For example, ferrocene, as a RAM attached to the
compositions of the invention as described in the examples, has a redox potential of roughly 200 mV in
aqueous solution (which can change significantly depending on what the ferrocene is bound to, the
manner of the linkage and the presence of any substitution groups). Ferrocyanide, an electron source,
has a redox potential of roughly 200 mV as well On aqueous solution). Accordingly, at or above
voltages of roughly 200 mV, ferrocene is converted to ferricenium, which then transfers an electron to
the electrode. Now the ferricyanide can be oxidized to transfer an electron to the RAM. In this way, the
electron source (or co-reductant) serves to amplify the signal generated in the system, as the electron
source molecules rapidly and repeatedly donate electrons to the RAM attached to the assay complex.
The rate of electron donation or acceptance will be limited by the rate of diffusion of the co-reductant,
the electron transfer between the co-reductant and the RAM, which in turn is affected by the
concentration and size, etc.

Alternatively, input electron sources that have lower redox potentials than the RAM are used. At
voltages less than the redox potential of the RAM, but higher than the redox potential of the electron
source, the input source such as ferrocyanide is unable to be oxided and thus is unable to donate an
electron to the RAM; i.e. no electron transfer occurs. Once ferrocene is oxidized, then there is a
pathway for electron transfer.

In an alternate preferred embodiment, an input electron source is used that has a higher redox potential
than the RAM of the label probe. For example, luminol, an electron source, has a redox potential of
roughly 720 mV. At voltages higher than the redox potential of the RAM, but lower than the redox
potential of the electron source, i.e. 200 - 720 mV, the ferrocene is oxided, and transfers a single
electron to the electrode via the conductive oligomer. However, the RAM is unable to accept any
electrons from the luminol electron source, since the voltages are less than the redox potential of the
luminol. However, at or above the redox potential of luminol, the luminol then transfers an electron to
the RAM, allowing rapid and repeated electron transfer. In this way, the electron source (or co-
reductant) serves to amplify the signal generated in the system, as the electron source molecules
rapidly and repeatedly donate electrons to the RAM of the assay complex.

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Luminol has the added benefit of becoming a chemiluminiscent species upon oxidation (see Jirka et a!.,
Analytica Chimica Acta 284:345 (1993)), thus allowing photo-detection of electron transfer from the
RAM to the electrode. Thus, as long as the luminol is unable to contact the electrode directly, i.e. in the
presence of the SAM such that there is no efficient electron transfer pathway to the electrode, luminol
can only be oxidized by transferring an electron to the RAM on the assay complex. When the RAM is
not present, luminol is not significantly oxidized, resulting in a low photon emission and thus a low (if
any) signal from the luminol. In the presence of the target a much larger signal is generated. Thus,
the measure of luminol oxidation by photon emission is an indirect measurement of the ability of the
RAM to donate electrons to the electrode. Furthermore, since photon detection is generally more
sensitive than electronic detection, the sensitivity of the system may be increased. Initial results suggest
that luminescence may depend on hydrogen peroxide concentration, pH, and luminol concentration,
the latter of which appears to be non-linear.

/Suitable electron source molecules are well known in the art, and include, but are not limited to,
ferricyanide, and luminol.

Alternatively, output electron acceptors or sinks could be used, i.e. the above reactions could be run in
reverse, with the RAM such as a metallocene receiving an electron from the electrode, converting it to
the metallicenium, with the output electron acceptor then accepting the electron rapidly and repeatedly.
In this embodiment, cobalticenium is the preferred RAM.

Changes in the? faradaic impedance of the system, e.g. differences in the rate or quantity of electron
transfer, can be detected in a variety of ways. A variety of detection methods may be used, including,
but not limited to, optical detection (as a result of spectral changes upon changes in redox states),
which includes fluorescence, phosphorescence, luminiscence, chemiluminescence,
electrochemiluminescence, and refractive index; and electronic detection, including, but not limited to,
amperommetry, voltammetry, capacitance and impedence. These methods include time or frequency
dependent methods based on AC or DC currents, pulsed methods, lock-in techniques, filtering (high
pass, low pass, band pass), and time-resolved techniques including time-resolved fluorescence.

In one embodiment, the efficient transfer of electrons from the RAM to the electrode results in
stereotyped changes in the redox state of the RAM. With many RAMs, including the complexes of
ruthenium containing bipyridine, pyridine and imidazole rings, these changes in redox state are
associated with changes in spectral properties. Significant differences in absorbance are observed
between reduced and oxidized states for these molecules. See for example Fabbrizzi et al., Chem.
Soc. Rev. 1995 pp197-202). These differences can be monitored using a spectrophotometer or simple
photomultiplier tube device.

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In this embodiment, possible electron donors and acceptors include all the derivatives listed above for
photoactivation or initiation. Preferred electron donors and acceptors have characteristically large
spectral changes upon oxidation and reduction resulting in highly sensitive monitoring of electron
transfer. Such examples include Ru(NHj) 4 py and Ru(bpy) 2 im as preferred examples. It should be
understood that only the donor or acceptor that is being monitored by absorbance need have ideal
spectral characteristics.

In a preferred embodiment, the electron transfer is detected fluorometrically. Numerous transition
metal complexes, including those of ruthenium, have distinct fluorescence properties. Therefore, the
change in redox state of the electron donors and electron acceptors attached to the redox active
complex can be monitored very sensitively using fluorescence, for example with Ru(4,7-biphenyl 2 -
phenanthroline) 3 2+ . The production of this compound can be easily measured using standard
fluorescence assay techniques. For example, laser induced fluorescence can be recorded in a
standard single cell fluorimeter, a flow through "on-line" fluorimeter (such as those attached to a
chromatography system) or a multi-sample "plate-reader" similar to those marketed for 96-well immuno
assays.

Alternatively, fluorescence can be measured using fiber optic sensors with binding ligands in solution or
attached to the fiber optic. Fluorescence is monitored using a photomultiplier tube or other light
detection instrument attached to the fiber optic. The advantage of this system is the extremely small
volumes of sample that can be assayed.

In addition, scanning fluorescence detectors such as the Fluorlmager sold by Molecular Dynamics are
ideally suited to monitoring the fluorescence of modified molecules arrayed on solid surfaces. The
advantage of this system is the large number of electron transfer probes that can be scanned at once
using chips covered with thousands of distinct binding ligands.

Many transition metal complexes display fluorescence with large Stokes shifts. Suitable examples
include bis- and trisphenanthroline complexes and bis- and trisbipyridyl complexes of transition metals
such as ruthenium (see Juris, A., Balzani, V. f et al. Coord. Chem. Rev., V. 84, p. 85-277, 1988).
Preferred examples display efficient fluorescence (reasonably high quantum yields) as well as low
reorganization energies. These include Ru(4,7-biphenyl 2 -phenanthroline)3 2> , Ru(4,4'-diphenyl-2^'-
Hpyridine)/* and platinum complexes (see Cummings et al., J. Am. Chem. Soc. 1 18:1949-1960 (1996),
incorporated by reference). Alternatively, a reduction in fluorescence associated with hybridization can
be measured using these systems.

In a further embodiment, electrochemiluminescence is used as the basis of the electron transfer
detection. With some RAMs such as Ru 2 *(bpy) 3 , direct luminescence accompanies excited state decay.
Changes in this property are associated with ligand binding and can be monitored with a simple

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photomultiplier tube arrangement (see Blackburn, G. F. Clin. Chem. 37: 1534-1539 (1991); and Juris
et al M supra.

In a preferred embodiment, electronic detection is used, including amperommetry, voltammetry,
5 capacitance, and impedence. Suitable techniques include, but are not limited to, electrogravimetry;
coulometry (including controlled potential coulometry and constant current coulometry); voltametry
(cyclic voltametry, pulse voltametry (normal pulse voltametry, square wave voltametry, differential pulse
voltametry, Osteryoung square wave voltametry, and coulostatic pulse techniques); stripping analysis
(aniodic stripping analysis, cathiodic stripping analysis, square wave stripping voltammetry);
1 0 conductance measurements (electrolytic conductance, direct analysis); time-dependent

electrochemical analyses (chronoamperometry, chronopotentiometry, cyclic chronopotentiometry and
amperometry, AC polography, chronogalvametry, and chronocoulometry); AC impedance
measurement; capacitance measurement; AC voltametry; and photoelectrochemistry.

15 In a preferred embodiment, monitoring electron transfer is via amperometric detection. This method of
detection involves applying a potential (as compared to a separate reference electrode) between the
complex-conjugated electrode and a reference (counter) electrode in the sample containing target
genes of interest. Electron transfer of differing efficiencies is induced in samples in the presence or
absence of target analytes; that is, the presence or absence of the target analyte can result in different

20 currents.

The device for measuring electron transfer amperometrically involves sensitive current detection and
includes a means of controlling the voltage potential, usually a potentiostat This voltage is optimized
with reference to the potential of the electron donating complex on the label probe. Possible electron
25 donating complexes include those previously mentioned with complexes of iron, osmium, platinum,
cobalt, rhenium and ruthenium being preferred and complexes of iron being most preferred.

In a preferred embodiment, alternative electron detection modes are utilized. For example,
potentiometric (or voltammetric) measurements involve non-faradaic (no net current flow) processes

30 and are utilized traditionally in pH and other ion detectors. Similar sensors are used to monitor electron
transfer between the RAM and the electrode. In addition, other properties of insulators (such as
resistance) and of conductors (such as conductivity, impedance and capicitance) could be used to
monitor electron transfer between RAM and the electrode. Finally, any system that generates a current
(such as electron transfer) also generates a small magnetic field, which may be monitored in some

35 embodiments.

It should be understood that one benefit of the fast rates of electron transfer observed in the
compositions of the invention is that time resolution can greatly enhance the signal-to-noise results of
monitors based on absorbance, fluorescence and electronic current The fast rates of electron transfer

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of the present invention result both in high signals and stereotyped delays between electron transfer
initiation and completion. By amplifying signals of particular delays, such as through the use of pulsed
initiation of electron transfer and "lock-in" amplifiers of detection, and Fourier transforms.

In a preferred embodiment, electron transfer is initiated using alternating current (AC) methods.
Without being bound by theory, it appears that RAMs, bound to an electrode, generally respond
similarly to an AC voltage across a circuit containing resistors and capacitors. Basically, any methods
which enable the determination of the nature of these complexes, which act as a resistor and capacitor,
can be used as the basis of detection. Surprisingly, traditional electrochemical theory, such as
exemplified in Laviron et al M J. Eiedroanal. Chem. 97:135 (1979) and Laviron et al M J. Electroanal.
Chem. 105:35 (1979), both of which are incorporated by reference, do not accurately model the
systems described herein, except for very small (less than 1 0 mV) and relatively large numbers of
molecules. That is, the AC current (I) is not accurately described by Laviron's equation. This may be
due in part to the fact that this theory assumes an unlimited source and sink of electrons, which is not
true in the present systems.

Accordingly, alternate equations were developed, using the Nernst equation and first principles to
develop a model which more closely simulates the results. This was derived as follows. The Nernst
equation, Equation 1 below, describes the ratio of oxidized (O) to reduced (R) molecules (number of
molecules ■ n) at any given voltage and temperature, since not every molecule gets oxidized at the
same oxidation potential.

Eoc is the electrode potential, E<, is the formal potential of the metal complex, R Is the gas constant, T Is
the temperature in degrees Kelvin, n Is the number of electrons transferred, F rs faraday's constant, [O]

Equation 1

E DC" E (

(1)

is the concentration of oxidized molecules and [R] is the concentration of reduced molecules.

The Nernst equation can be rearranged as shown in Equations 2 and 3:

Equation 2

(2)

Eoc is the DC component of the potential.

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Equation 3
exp RT = iili (3

Equation 3 can be rearranged as follows, using normalization of the concentration to equal 1 for
simplicity, as shown in Equations 4, 5 and 6. This requires the subsequent multiplication by the total
number of molecules.

10 Equation 4 [0] + [R] = 1

Equation 5 [O] = 1 - [R]
Equation 6 (R] = 1-[0]

Plugging Equation 5 and 6 into Equation 3, and the fad that nF/RT equals 38.9 V 1 , for n=1 , gives
1 5 Equations 7 and 8, which define [O] and [R], respectively:

Equation 7

[0] = —^ (4)

, 38.9(E-Eo)

1 + exp 07

Equation 8
rt> I _ \

•j . 38.9 (E - Eo) < 5 >

25 1 + ex P •

Taking into consideration the generation of an AC faradaic current, the ratio of [0]/[R] at any given
potential must be evaluated. At a particular Eoc with an applied E^, as is generally described herein, at
the apex of the E^ more molecules will be in the oxidized state, since the voltage on the surface is now

30 (Eoc + e ac); at the bottom, more will be reduced since the voltage is lower. Therefore, the AC current at
a given E^ will be dictated by both the AC and DC voltages, as well as the shape of the Nernstian
curve. Specifically, if the number of oxidized molecules at the bottom of the AC cycle is subtracted
from the amount at the top of the AC cycle, the total change in a given AC cycle is obtained, as is
generally described by Equation 9. Dividing by 2 then gives the AC amplitude.

35 Equation 9

* (electrons at E~ + E^n - (electrons at [F oc -P^
2

40 Equation 1 0 thus describes the AC current which should result

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Equation 10

As depicted in Equation 1 1 , the total AC current will be the number of redox molecules C) t times
faraday's constant (F), times the AC frequency (co), times 0.5 (to take Into account the AC amplitude),
times the ratios derived above In Equation 7. The AC voltage is approximated by the average amplitude,

Equation 1 1

L 0 *U exp % exp «
c — ( ~ 5 ) - — — (7)

A 38.9 [Edc ♦ — £ - EJ 38.9 [J?^ - - £

1 + exp * 1 + exp *

However, Equation 1 1 does not incorporate the effect of electron transfer rate nor of instrument factors
including input impedance and stray capacitance. Electron transfer rate is important when the rate is
close to or lower than the applied frequency. Thus, the true i^ should be a function of all three, as
depicted in Equation 12,

Equation 12
'ac = f(Nernst factorsJfOcCTJfOnstrument factors)

These equations can be used to model and predict the expected AC currents in systems which use
input signals comprising both AC and DC components. As outlined above, traditional theory surprisingly
does not model these systems at all, except for very low voltages.

In general, non-specifically bound analytes can show differences in impedance (i.e. higher impedances)
than when the analytes are specifically bound. In a preferred embodiment the non-specifically bound
material Is washed away, resulting in an effective impedance of infinity. Thus, AC detection gives
several advantages as is generally discussed below, including an increase in sensitivity, and the ability
to filter out" background noise. In particular, changes in impedance (including, for example, bulk
impedance) as between non-specific binding of target analytes and target-specific assay complex
formation may be monitored.

Accordingly, when using AC initiation and detection methods, the frequency response of the system
changes as a result of the presence of the RAM. By "frequency response" herein is meant a
modification of signals as a result of electron transfer between the electrode and the RAM. This

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modification is different depending on signal frequency. A frequency response includes AC currents at
one or more frequencies, phase shifts, DC offset voltages, faradaic impedance, etc.

Once the assay complex including the target anaiyte is made, a first input electrical signal is then
5 applied to the system, preferably via at least the sample electrode (containing the complexes of the
invention) and the counter electrode, to initiate electron transfer between the electrode and the RAM.
Three electrode systems may also be used, with the voltage applied to the reference and working
electrodes. The first input signal comprises at least an AC component The AC component may be of
variable amplitude and frequency. Generally, for use in the present methods, the AC amplitude ranges
1 0 from about 1 mV to about 1 .1 V, with from about 1 0 mV to about 800 mV being preferred, and from
about 1 0 mV to about 300 mV being especially preferred. The AC frequency ranges from about 1 0 Hz
to about 1 00 KHz, with from about 1 0 Hz to about 1 0 MHz being preferred, and from about 1 00 Hz to
about 20 MHz being especially preferred.

1 5 The use of combinations of AC and DC signals gives a variety of advantages, including surprising
sensitivity and signal maximization.

In a preferred embodiment, the first input signal comprises a DC component and an AC component.
That is, a DC offset voltage between the sample and counter electrodes is swept through the

20 electrochemical potential of the RAM (for example, when ferrocene is used, the sweep is generally from
0 to 500 mV) (or alternatively, the working electrode is grounded and the reference electrode is swept
from 0 to -500 mV). The sweep is used to identify the DC voltage at which the maximum response of
the system is seen. This is generally at or about the electrochemical potential of the RAM. Once this
voltage is determined, either a sweep or one or more uniform DC offset voltages may be used. DC

25 offset voltages of from about -1 V to about +1 .1 V are preferred, with from about -500 mV to about +800
mV being especially preferred, and from about -300 mV to about 500 mV being particularly preferred.
In a preferred embodiment, the DC offset voltage Is not zero. On top of the DC offset voltage, an AC
signal component of variable amplitude and frequency is applied, if the RAM is present, and can
respond to the AC perturbation, an AC current will be produced due to electron transfer between the

30 electrode and the RAM.

For defined systems, it may be sufficient to apply a single input signal to differentiate between the
presence and absence of the target anaiyte. Alternatively, a plurality of input signals are applied. As
outlined herein, this may take a variety of forms, including using multiple frequencies, multiple DC offset
35 voltages, or multiple AC amplitudes, or combinations of any or all of these.

Thus, in a preferred embodiment, multiple DC offset voltages are used, although as outlined above, DC
voltage sweeps are preferred. This may be done at a single frequency, or at two or more frequencies .

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In a preferred embodiment, the AC amplitude is varied. Without being bound by theory, it appears that
increasing the amplitude increases the driving force. Thus, higher amplitudes, which result in higher
overpotentials give faster rates of electron transfer. Thus, generally, the same system gives an
improved response (i.e. higher output signals) at any single frequency through the use of higher
overpotentials at that frequency. Thus, the amplitude may be increased at high frequencies to increase
the rate of electron transfer through the system, resulting in greater sensitivity. In addition, this may be
used, for example, to induce responses in slower systems such as those that do not possess optimal
spacing configurations.

In a preferred embodiment, measurements of the system are taken at at least two separate amplitudes
or overpotentials, with measurements at a plurality of amplitudes being preferred. As noted above,
changes in response as a result of changes in amplitude may form the basis of identification, calibration
and quantification of the system. In addition, one or more AC frequencies can be used as well.

In a preferred embodiment, the AC frequency is varied. At different frequencies, different molecules
respond in different ways. As will be appreciated by those in the art, increasing the frequency generally
increases the output current However, when the frequency is greater than the rate at which electrons
may travel between the electrode and the RAM higher frequencies result in a loss or decrease of output
signal. At some point, the frequency will be greater than the rate of electron transfer between the RAM
and the electrode, and then the output signal will also drop.

In one embodiment, detection utilizes a single measurement of output signal at a single frequency.
That is, the frequency response of the system in the absence of target analyte can be previously
determined to be very low at a particular high frequency. Using this Information, any response at a
particular frequency, will show the presence of the assay complex. That is, any response at a particular
frequency is characteristic of the assay complex. Thus, it may only be necessary to use a single Input
high frequency, and any changes in frequency response is an indication that the analyte is present, and
thus that the target sequence is present

In addition, the use of AC techniques allows the significant reduction of background signals at any
single frequency due to entities other than the analytes, i.e. "locking out" or "filtering" unwanted signals.
That is, the frequency response of a charge carrier or redox active molecule in solution will be limited by
its diffusion coefficient and charge transfer coefficient Accordingly, at high frequencies, a charge
carrier may not diffuse rapidly enough to transfer its charge to the electrode, and/or the charge transfer
kinetics may not be fast enough. This is particularly significant in embodiments that do not have good
monolayers, i.e. have partial or insufficient monolayers, i.e. where the solvent is accessible to the
electrode. As outlined above, in DC techniques, the presence of "holes" where the electrode is
accessible to the solvent can result in solvent charge carriers "short circuiting" the system, i.e. the reach
the electrode and generate background signal. However, using the present AC techniques, one or

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more frequencies can be chosen that prevent a frequency response of one or more charge carriers in
solution, whether or not a monolayer is present This is particularly significant since many biological
fluids such as blood contain significant amounts of redox active molecules which can interfere with
amperometric detection methods.

in a preferred embodiment, measurements of the system are taken at at least two separate
frequencies, with measurements at a plurality of frequencies being preferred. A plurality of frequencies
includes a scan. For example, measuring the output signal, e.g., the AC current, at a low input
frequency such as 1 - 20 Hz, and comparing the response to the output signal at high frequency such
10 as 1 0 - 1 00 kHz will show a frequency response difference between the presence and absence of the
RAM. in a preferred embodiment, the frequency response is determined at at least two, preferably at
least about five, and more preferably at least about ten frequencies.

After transmitting the input signal to initiate electron transfer, an output signal is received or detected.
1 5 The presence and magnitude of the output signal will depend on a number of factors, including the

overpotential/amplitude of the input signal; the frequency of the input AC signal; the composition of the

intervening medium; the DC offset; the environment of the system; the nature of the RAM; the solvent;

and the type and concentration of salt At a given input signal, the presence and magnitude of the

output signal will depend in general on the presence or absence of the target analyte, the placement
20 and distance of the RAM from the surface of the monolayer and the character of the input signal. In

some embodiments, it may be possible to distinguish between non-specific binding of materials and the

formation of target specific assay complexes, on the basis of impedance.

In a preferred embodiment the output signal comprises an AC current As outlined above, the
25 magnitude of the output current will depend on a number of parameters. By varying these parameters,
the system may be optimized in a number of ways.

In general, AC currents generated in the present invention range from about 1 femptoamp to about 1
milliamp, with currents from about 50 femptoamps to about 100 microamps being preferred, and from
30 about 1 picoamp to about 1 microamp being especially preferred.

In a preferred embodiment the output signal is phase shifted in the AC component relative to the input
signal. Without being bound by theory, it appears that the systems of the present invention may be
sufficiently uniform to allow phase-shifting based detection. That is, the complex biomolecules of the
35 invention through which electron transfer occurs react to the AC input in a homogeneous manner,

similar to standard electronic components, such that a phase shift can be determined. This may serve
as the basis of detection between the presence and absence of the analyte and/or differences between
the presence of target-specific assay complexes and non-specific binding of materials to the system
components.

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The output signal is characteristic of the presence of the analyte; that is, the output signal Is
characteristic of the presence of the target-specific assay complex. In a preferred embodiment, the
basis of the detection is a difference in the faradaic impedance of the system as a result of the
formation of the assay complex Of importance in the methods of the invention is that the faradaic
impedance between the RAM and the electrode may be signficantly different depending on whether the
targets are specifically or non-specifically bound to the electrode.

Accordingly, the present invention further provides electronic devices or apparatus for the detection of
analytes using the compositions of the invention. The apparatus includes a test chamber for receiving a
sample solution which has at least a first measuring or sample electrode, and a second measuring or
counter electrode. Three electrode systems are also useful. The first and second measuring
electrodes are in contact with a test sample receiving region, such that in the presence of a liquid test
sample, the two electrodes may be in electrical contact

In a preferred embodiment, the apparatus also includes detection electrodes comprising the
compositions of the invention, including redox active complexes including binding ligands and redox
active molecules, and a monolayer comprising conductive oligomers, such as are described herein.

The apparatus further comprises an AC voltage source electrically connected to the test chamber; that
is, to the measuring electrodes. Preferably, the AC voltage source is capable of delivering DC offset
voltage as well.

In a preferred embodiment the apparatus further comprises a processor capable of comparing the
input signal and the output signal. The processor is coupled to the electrodes arid configured to receive
an output signal, and thus detect the presence of the target

Thus, the compositions of the present invention may be used in a variety of research, clinical, quality
control, or field testing settings.

In a preferred embodiment, viral and bacterial detection is done using the complexes of the invention.
In this embodiment, binding ligands (for example antibodies or fragments thereof) are designed to
detect targets (for example surface proteins) from a variety of bacteria and viruses. For example,
current blood-screening techniques rely on the detection of anti-HIV antibodies. The methods disclosed
herein allow for direct monitoring of circulating virus within a patient as an improved method of
assessing the efficacy of anti-viral therapies. Similarly, viruses associated with leukemia, HTLV-I and
HTLV-II, may be detected in this way. Bacterial infections such as tuberculosis, clymidia and other
sexually transmitted diseases, may also be detected. Similarly, the compositions of the invention find
use as probes for toxic bacteria in the screening of water and food samples. Similarly, bioremediation
strategies may be evaluated using the compositions of the invention.

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The present invention provides methods which can result in sensitive detection of target analytes. In a
preferred embodiment, less than about 1 0 12 molecules are detected, with less than about 1 0 10 being
preferred, less than 10 8 being particularly preferred, less than about 10* being especially preferred, and
less than about 1 0 4 being most preferred.

All references cited herein are incorporated by reference in their entireity.

CLAIMS

We claim:

1 . A composition comprising an electrode comprising:

a) a self-assembled monolayer; and
15 b ) a metal ion iigand covalently attached to said electrode via a conductive oligomer,

2. A composition according to claim 1 wherein said electrode comprises a plurality of different metal
ion ligands.

20 3. A composition according to claim 1 wherein said metal ion Iigand is phenanthroline.

4. A composition according to claim 1 wherein said conductive oligomer is selected from the group
consisting of:

Y is an aromatic group;
n is an integer from 1 to 50;
g is either 1 or zero;

e is an integer from zero to 10;and
mis zero or 1;

wherein when g is 1 , B-D is a conjugated bond; and

wherein when g is zero, e is 1 and D is preferably carbonyl, or a heteroatom moiety, wherein
the heteroatom is selected from oxygen, sulfur, nitrogen, silicon or phosphorus; or

wherein

30
35

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wherein

n is an integer from 1 to 50;
m is 0 or 1 ;
C is carbon;

J is carbonyi or a heteroatom moeity, wherein the heteroatom is selected from the group
consisting of oxygen, nitrogen, silicon, phosphorus, sulfur; and

G is a bond selected from alkane, alkene or acetylene, wherein if m = 0, at least one G is not
alkane.

5. A method of detecting a metal ion comprising:

a) applying a first input signal to an assay complex comprising:

i) an electrode comprising:

1) a self-assembled monolayer;

2) a metal ion iigand covalently attached to said electrode via a conductive
oligomer;

ii) a metal ion;

b) detecting a change in the faradaic impedance of the system as a result of the association
of the metal ion with the metal ion ligand.

6. A method of detecting a non-nucleic acid target analyte in a sample comprising:

a) applying a first input signal to an assay complex comprising:

i) a redox active complex comprising:

1) a redox active molecule;

2) a binding ligand that will bind the target analyte; and

ii) a target analyte;

wherein at least one component of said assay complex is covalently attached to an electrode
via conductive oligomer; and

b) detecting a change in the faradaic impedance of the system as a result of the association
of the redox active molecule with the target analyte, if present

7. A method according to claim 6 wherein said electrode further comprises a self-assembled
monolayer.

8. A method according to claim 6 wherein said input signal comprises an AC component

SUBSTITUTE SHEET (RULE 26)

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9. A method according to claim 8, wherein said input signal further comprises a DC component.

1 0. A method according to claim 6 wherein said redox active molecule is covalently attached to said
electrode.

11. A method according to claim 6 wherein said binding ligand is covalently attached to said electrode.

12. A method according to claim 6 wherein said redox active molecule is a transition metal complex.

10 1 3. A method according to claim 12 wherein said transition metal complex is ferrocene.

14. A method according to claim 6 wherein said redox active molecule is covalently attached to said
binding ligand.

15 15. A method according to claim 6 wherein said detecting is by receiving an output signal characteristic
of the presence of said analyte.

16. A method according to claim 15 wherein said output signal comprises a current.

20 1 7. A method according to claim 6 wherein said conductive oligomer is selected from the group
consisting of:

25 wherein

Y is an aromatic group;

n Is an integer from 1 to 50;

g is either 1 or zero;

e is an integer from zero to 10;and

mis zero or 1;

wherein when g is 1 , B-D is a conjugated bond; and

wherein when g is zero, e is 1 and D is preferably carbonyi, or a heteroatom moiety, wherein
the heteroatom is selected from oxygen, sulfur, nitrogen, silicon or phosphorus; or

wherein

n is an integer from 1 to 50;
m is 0 or 1 ;

SUBSTITUTE SHEET (RULE 26)

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PCT/US98/12430

C is carbon;

J is carbonyl or a heteroatom moeity, wherein the heteroatom is selected from the group
consisting of oxygen, nitrogen, silicon, phosphorus, sulfur; and

G is a bond selected from alkane, alkene or acetylene, wherein if m = 0, at least one G is not
alkane.

18. An apparatus for the detection of a non-nucleic acid target analyte in a test sample, comprising:

a) a test chamber comprising at least a first and a second measuring electrode, wherein said
first measuring electrode comprises:

i) a self-assembled monolayer;

ii) a binding ligand covalently attached to said electrode via conductive oligomer;

b) a voltage source electrically connected to said test chamber.

19. An apparatus according to claim 18, further comprising a processor.

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4/8

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5/8

DRUG

Patients' Sample ^ Specific Antibody

Excess Antibody Can
Capture Drugs On
Surface M Could

Show Either
Different Redox
Potential Or

Intensity
Enhancement

FIG..4

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7/8

1.310

FIG..

AC CURRENT/

1e-7A 1.285

' " ' I " " I '" ' " 1 1 ' " i " " i " 1 1 i ' 1 " I " '
0.60 0.55 0.50 0.45 0.40 0.35 0.30 0.25 0.20

POTENTIAL/ V

AC CURRENT/

1e-7A 5.1 -

5.0 H
4.9 -i
4.8
4.7^

FIG-6C

4.6-

■ 1 ■ ■ i ■ ' i ■ | ■ i i i | » i i i |

"' ' > 11 11 I 11 1 1 | 1 ■ ■ » | i i i i | i
0.60 0.50 0.40 0.30 0.20 0.10
POTENTIAL / V

0.00

SUBSTITUTE SHEET (RULE 26)

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PCT/US98/12430

8/8

2.0

1.8-
1.6-
1.4 -
1.2 -

AC CURRENT/

1e-8A io-

0.8 -
0.6 -
0.4-
0.2 -

Ru(NH3) 4 PyCI ADDED

1 1

0.80 0.70 0.60

POTENTIAL/ V

1 .00 0.90

F1G..6D

0.50

0.40

AC CURRENT/
1n-9A

K 4 FeH(Cn) 6

t 1 1 r 1 1 1 1 r

1.0 0.9 0.8 0.7 0.6 0.5 0.4 0.3 0.2 0.1 0.0

FIG..6E

POTENTIAL /V

SUBSTITUTE SHEET (RULE 26)

INTERNATIONAL SEARCH REPORT

tn .Vial Application No

PCT/US 98/12430

A, CLASSIFICATION OF SUBJECT MATTER

IPC 6 G01N27/327 G01N33/543 G01N33/84 G01N27/333

According to International Patent Classification (IPC) or to both national classification and IPC

B. FIELDS SEARCHED

Minimum documentation searched (classification 3ystem followed byclassiticatton symbols)

IPC 6 G01N

Documentation searched other than minimum documentation to the extent that such documents are included in the fields searched

Electronic data base consulted during the international search (name of data base and. where practical, search terms used)

C. DOCUMENTS CONSIDERED TO BE RELEVANT

Category • Citation of document, with indication, where appropriate, of the relevant passages

Relevant to claim No.

US 5 571 568 A (RIBI HANS 0 ET AL)
5 November 1996
see abstract

see column 2, line 55 - column 3, line 2

AIZAWA M ET AL: "INTEGRATED MOLECULAR

SYSTEMS FOR BIOSENSORS*"

SENSORS AND ACTUATORS B,

vol. B24, no. 1/03, PART 01, March 1995,

pages 1-5, XP000521315

see the whole document

US 5 108 573 A (RUBINSTEIN ISRAEL ET AL)
28 April 1992
see abstract

-/-

1,4-6,18

1,5,6,18

~X] Further documents are listed In the continuation of box C.

Patent family members are listed in annex.

* Special categories of cited documents :

"A" document defining the general state of the art which is not
considered to be of particular relevance

"E - earlier document but published on or after the International
filing date

V document which may throw doubts on priority daim(s) or
which (s cited to establish the publication date of another
citation or other special reason (as specified)

"O" document referring to an oral disclosure, use. exhibition or
other means

■P" document pubfished prior to the International filing date but
later than the priority date claimed

T" later document published after the international filing date
or priority date and not In conflict with the application but
cited to understand the principle or theory underlying the
invention

"X" document of particular relevance; the claimed Invention
cannot be considered novel or cannot be considered to
involve an Inventive step when the document is taken alone

"Y" document of particular relevance; the claimed invention

cannot be considered to involve an inventive step when the .
document Is combined with one or more other such docu-
ments, such combination being obvious to a person skiled
In the art

document member of the same patent family

Date of the actual completion of theintematlonal search

1 October 1998

Date of maiUng of the International search report

09/10/1998

Mama and making address of the ISA

European Patent Office. P.B. 5818 Patentlaan2
NL - 2280 HV Rljswifk
Tel. (+31-70) 340-2040. Tx. 31 651 epo nJ,
Fax: (+31-70) 340-3016

Authorized officer

Moreno, C

Forni PCT7ISA/210 (wcond srwrt) (Jury 1992)

page 1 of 2

INTERNATIONAL SEARCH REPORT

In )nal Application No

PCT/US 98/12430

C.(Continualion) DOCUMENTS CONSIDERED TO BE RELEVANT

Category *

Citation ol document, with indicatloa where appropriate, ol the relevant passages (

Relevant to claim No.

W. M. ALBERS ET AL: "Design of novel
molecular wires for realizing
long-distance electron transfer."
BIOELECTROCHEMISTRY AND BIOENERGETICS ,
vol. 42, 1997, pages 25-33, XP002077970
see the whole document

1,5,6,18

R. P. HSUNG ET AL: "Synthesis and
characterization of unsymmetrlc
ferrocene-termi nated phenyl ethynyl
oligomers."
ORGANOMETALLICS,

vol. 14, no. 10, 1995, pages 4808-4815,
XP002077968

see the whole document

Form PCTASA/210 (conSnuatfcn ol second sheet) (July 1992)

page 2 of 2.

INTERNATIONAL SEARCH REPORT

information on patent family member*

In. \ial Application No

PCT/US 98/12430

Patent document
cited in search report

Publication
date

Patent family
member(s)

Publication
date

5491097 A

5156810 A

lie
UI>

5427915 A

5268305 A

07-12-1993

145064 T

. 15-11-1996

2019039 A

Ib-I2 _ l990

69029060 D

12-12-1996

69029060 T

30-04-1997

0402917 A

19-12-1990

3128449 A

31-05-1991

US 5108573 A

28-04-1992

NONE

Form PCT/1SA/210 (patent tamly annex) (JiJy 1992)

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